Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_P06
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 31 0.71
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 31 0.71
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 31 0.71
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 31 0.71
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 31 0.94
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 31 0.94
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 29 2.9
AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical ... 29 2.9
U30943-1|AAC47116.1| 192|Caenorhabditis elegans cyclophilin-1 p... 29 3.8
AL033512-4|CAA22075.1| 192|Caenorhabditis elegans Hypothetical ... 29 3.8
Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical pr... 28 6.6
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 28 6.6
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 28 6.6
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 28 6.6
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 28 6.6
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 28 6.6
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 28 6.6
AF039047-14|AAM15589.1| 978|Caenorhabditis elegans Human mlk (m... 28 6.6
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 27 8.7
U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone... 27 8.7
U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone... 27 8.7
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 8.7
AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear recep... 27 8.7
AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear recep... 27 8.7
AF273777-1|AAG15126.1| 421|Caenorhabditis elegans nuclear recep... 27 8.7
AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear recep... 27 8.7
>Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical
protein T21B4.14 protein.
Length = 426
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 385 TPCSFND-FLLFRSGLPLKCNVMSLAGNPDSI 293
T CS +D FL+ +SGL L CN++ L P I
Sbjct: 94 TNCSLDDRFLVSKSGLALTCNIIGLVALPIQI 125
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M + V TL LD+ + +E K E + G P L F GK +N+ K+ ++
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQ-MNDDKTAADY 59
Query: 381 GVHDGDVIILL 413
V G V+ L+
Sbjct: 60 KVLGGSVLHLV 70
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 59
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFV 81
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 135
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFV 157
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 211
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFV 233
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 287
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 288 NIQKESTLHLVLRLRGGMQIFV 309
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 363
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 364 NIQKESTLHLVLRLRGGMQIFV 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 439
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 440 NIQKESTLHLVLRLRGGMQIFV 461
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 59
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFV 81
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 135
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFV 157
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 211
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFV 233
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 287
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 288 NIQKESTLHLVLRLRGGMQIFV 309
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 363
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 364 NIQKESTLHLVLRLRGGMQIFV 385
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 515
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 516 NIQKESTLHLVLRLRGGMQIFV 537
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 591
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 592 NIQKESTLHLVLRLRGGMQIFV 613
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 667
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 668 NIQKESTLHLVLRLRGGMQIFV 689
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 743
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 744 NIQKESTLHLVLRLRGGMQIFV 765
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 819
Query: 381 GVHDGDVIILL 413
+ + L+
Sbjct: 820 NIQKESTLHLV 830
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 439
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 440 NIQKESTLHLVLRLRGGMQIFV 461
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 59
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFV 81
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 135
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFV 157
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 211
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFV 233
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 287
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 288 NIQKESTLHLVLRLRGGMQIFV 309
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 363
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 364 NIQKESTLHLVLRLRGGMQIFV 385
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 439
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 440 NIQKESTLHLVLRLRGGMQIFV 461
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 515
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 516 NIQKESTLHLVLRLRGGMQIFV 537
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 591
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 592 NIQKESTLHLVLRLRGGMQIFV 613
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 667
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 668 NIQKESTLHLVLRLRGGMQIFV 689
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 743
Query: 381 GVHDGDVIILLHMVNSAQNLSV 446
+ + L+ + + V
Sbjct: 744 NIQKESTLHLVLRLRGGMQIFV 765
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 819
Query: 381 GVHDGDVIILL 413
+ + L+
Sbjct: 820 NIQKQSTLHLV 830
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 59
Query: 381 GVHDGDVIILL 413
+ + L+
Sbjct: 60 NIQKESTLHLV 70
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 380
M++ V TL L+V +EN KA + + G P L F GK L + ++L ++
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDY 59
Query: 381 GVHDGDVIILL 413
+ + L+
Sbjct: 60 NIQKESTLHLV 70
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 234 IFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKK 365
+F + ++ +E K E ++G P L +GKPL ++KK
Sbjct: 154 LFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKK 197
>AF040643-2|AAB94961.1| 471|Caenorhabditis elegans Hypothetical
protein F14D2.7 protein.
Length = 471
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +3
Query: 399 VIILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRII 578
V+ L H + SA +L + +S + + ++DFSN+ S S N PV PR+
Sbjct: 129 VVTLAHTMGSASSLVLELNSTGIEPVLKNIDFSNL-----GDCGSKISNNEPV-APPRV- 181
Query: 579 REMFLANPDQLALL 620
+ L NP+ L L
Sbjct: 182 --LLLQNPNHLCWL 193
>U30943-1|AAC47116.1| 192|Caenorhabditis elegans cyclophilin-1
protein.
Length = 192
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 270 ENFKAFCEIESGFPAKDITLHFNG 341
ENF+A C E G + + LHF G
Sbjct: 52 ENFRALCTGEKGVGEQGVALHFKG 75
>AL033512-4|CAA22075.1| 192|Caenorhabditis elegans Hypothetical
protein Y49A3A.5 protein.
Length = 192
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 270 ENFKAFCEIESGFPAKDITLHFNG 341
ENF+A C E G + + LHF G
Sbjct: 52 ENFRALCTGEKGVGEQGVALHFKG 75
>Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical
protein D2089.3 protein.
Length = 268
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 453 SSQALPSGIASLDFSNIQVPTTSAN-TSMASRNTPVEEDPRI 575
SS +LPS + + Q P+TS N T++ S P DP I
Sbjct: 119 SSNSLPSDFPDISMNEPQQPSTSENATAVTSEEQPQLIDPFI 160
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/106 (24%), Positives = 48/106 (45%)
Frame = +3
Query: 321 ITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 500
IT + +G+P++ NK+ + H + + L VNS +N DS +AS +
Sbjct: 61 ITWYKDGQPVITNKEQVNSHRIVLDTGSLFLLKVNSGKN--GKDSDAGAYYCVASNEHGE 118
Query: 501 IQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPR 638
++ S +M + ED R+ A ++A+L+ + PR
Sbjct: 119 VKSNEGSLKLAM------LREDFRVRPRTVQALGGEMAVLECSPPR 158
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/106 (24%), Positives = 48/106 (45%)
Frame = +3
Query: 321 ITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 500
IT + +G+P++ NK+ + H + + L VNS +N DS +AS +
Sbjct: 61 ITWYKDGQPVITNKEQVNSHRIVLDTGSLFLLKVNSGKN--GKDSDAGAYYCVASNEHGE 118
Query: 501 IQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPR 638
++ S +M + ED R+ A ++A+L+ + PR
Sbjct: 119 VKSNEGSLKLAM------LREDFRVRPRTVQALGGEMAVLECSPPR 158
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 201 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDI-TLHFNGKPLLNNKKSLKE 377
+K + LN+ I + +D ELE A EI++ + I LH +L+ ++K+
Sbjct: 710 LKQEIAQLNEKISTKETEKDSELEKTIAQLEIDNSSKSDQIEKLHLRVNDMLDQMGTIKD 769
Query: 378 HGVHDGDVIILLHMVNSAQNLSVN 449
V + I + +AQ L N
Sbjct: 770 ELVKKNEEIKTI-SAKTAQLLESN 792
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 276 FKAFCEIESGFPAKDITLHFNGKPLLNNKKSLK 374
F+ F E GFP K + L N KP ++ +++ K
Sbjct: 304 FRLFFEKTVGFPNKKLRLLLNSKPEISQEEAFK 336
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/106 (24%), Positives = 48/106 (45%)
Frame = +3
Query: 321 ITLHFNGKPLLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 500
IT + +G+P++ NK+ + H + + L VNS +N DS +AS +
Sbjct: 61 ITWYKDGQPVITNKEQVNSHRIVLDTGSLFLLKVNSGKN--GKDSDAGAYYCVASNEHGE 118
Query: 501 IQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPR 638
++ S +M + ED R+ A ++A+L+ + PR
Sbjct: 119 VKSNEGSLKLAM------LREDFRVRPRTVQALGGEMAVLECSPPR 158
>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (mixed
lineage kinase)homolog protein 1, isoform a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 441 SVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALL 620
S+N S+Q P G D+ I T T N+P E+ R + NP +
Sbjct: 867 SINQSTQYYPVGGGCDDYIPIVQKTVIKPTVGEVGNSPYSENIRCATRN-VQNPQYIQCK 925
Query: 621 KQNNPR 638
K NPR
Sbjct: 926 KNQNPR 931
>AF039047-14|AAM15589.1| 978|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform b
protein.
Length = 978
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 441 SVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALL 620
S+N S+Q P G D+ I T T N+P E+ R + NP +
Sbjct: 805 SINQSTQYYPVGGGCDDYIPIVQKTVIKPTVGEVGNSPYSENIRCATRN-VQNPQYIQCK 863
Query: 621 KQNNPR 638
K NPR
Sbjct: 864 KNQNPR 869
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 131 FKNILQKLYKNGRYKQILLEYLN 63
F ++++KLYKN ++L E+LN
Sbjct: 4118 FAHMMEKLYKNSTQLELLREFLN 4140
>U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform c protein.
Length = 544
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 MVNSAQNLSVNDSSQALP--SGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 590
++N L +D S+ LP + I + +I+ + +M+++NT + +REMF
Sbjct: 137 LLNHMMRLQGDDWSRKLPVETRILLMQLMSIEDKVVKGDNNMSAQNTAKDPKSISLREMF 196
Query: 591 LANP 602
+ P
Sbjct: 197 ESKP 200
>U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform a protein.
Length = 583
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 MVNSAQNLSVNDSSQALP--SGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 590
++N L +D S+ LP + I + +I+ + +M+++NT + +REMF
Sbjct: 176 LLNHMMRLQGDDWSRKLPVETRILLMQLMSIEDKVVKGDNNMSAQNTAKDPKSISLREMF 235
Query: 591 LANP 602
+ P
Sbjct: 236 ESKP 239
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 131 FKNILQKLYKNGRYKQILLEYLN 63
F ++++KLYKN ++L E+LN
Sbjct: 4110 FAHMMEKLYKNSTQLELLREFLN 4132
>AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 565
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 MVNSAQNLSVNDSSQALP--SGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 590
++N L +D S+ LP + I + +I+ + +M+++NT + +REMF
Sbjct: 158 LLNHMMRLQGDDWSRKLPVETRILLMQLMSIEDKVVKGDNNMSAQNTAKDPKSISLREMF 217
Query: 591 LANP 602
+ P
Sbjct: 218 ESKP 221
>AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 595
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 MVNSAQNLSVNDSSQALP--SGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 590
++N L +D S+ LP + I + +I+ + +M+++NT + +REMF
Sbjct: 188 LLNHMMRLQGDDWSRKLPVETRILLMQLMSIEDKVVKGDNNMSAQNTAKDPKSISLREMF 247
Query: 591 LANP 602
+ P
Sbjct: 248 ESKP 251
>AF273777-1|AAG15126.1| 421|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 421
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 MVNSAQNLSVNDSSQALP--SGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 590
++N L +D S+ LP + I + +I+ + +M+++NT + +REMF
Sbjct: 14 LLNHMMRLQGDDWSRKLPVETRILLMQLMSIEDKVVKGDNNMSAQNTAKDPKSISLREMF 73
Query: 591 LANP 602
+ P
Sbjct: 74 ESKP 77
>AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 583
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 417 MVNSAQNLSVNDSSQALP--SGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 590
++N L +D S+ LP + I + +I+ + +M+++NT + +REMF
Sbjct: 176 LLNHMMRLQGDDWSRKLPVETRILLMQLMSIEDKVVKGDNNMSAQNTAKDPKSISLREMF 235
Query: 591 LANP 602
+ P
Sbjct: 236 ESKP 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,022
Number of Sequences: 27780
Number of extensions: 311296
Number of successful extensions: 902
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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