Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P06
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   1.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.8  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 146 YIYLNFKNILQKLYKNGRYKQILLEYLN 63
           Y Y N+ N     Y N  YK+  L+Y N
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK--LQYYN 114


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 146 YIYLNFKNILQKLYKNGRYKQILLEYLN 63
           Y Y N+ N     Y N  YK+  L+Y N
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK--LQYYN 114


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 146 YIYLNFKNILQKLYKNGRYKQILLEYLN 63
           Y Y N+ N     Y N  YK+  L+Y N
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK--LQYYN 114


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 146 YIYLNFKNILQKLYKNGRYKQILLEYLN 63
           Y Y N+ N     Y N  YK+  L+Y N
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKK--LQYYN 114


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 343 LPLKCNVMSLAGNPDSISQNALK 275
           LPL  N + L G+PD++    LK
Sbjct: 50  LPLIGNALDLFGSPDAMFSQVLK 72


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 426 SAQNLSVNDSSQALP 470
           SAQN+  N +SQA+P
Sbjct: 769 SAQNVPQNTNSQAIP 783


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 604 INWHYLNRIIQDLPML 651
           +N +YL R+  DLP L
Sbjct: 267 LNRYYLERLSNDLPYL 282


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 365 IIEGTRRPRRRCNYSSAHGEFRTES 439
           ++EG R  +R+   S+   E  TES
Sbjct: 207 VLEGPRNGKRKRKSSTIENESETES 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,436
Number of Sequences: 438
Number of extensions: 3762
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)