Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P05
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.24 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.24 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.24 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.55 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   6.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   6.7  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   8.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 371 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 216
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 235 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 371 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 216
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 183 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 371 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 216
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 366 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -1

Query: 398 WPRNPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 258
           W ++P+   + +    +  ++RT   +PT+++   S   SCS + +T
Sbjct: 67  WKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSSR--SVMTSCSSVPTT 111


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 90  NHHDGRVFLWCHPFIIT--SVRDMGSRG 167
           NH  GR+   CH  + T   ++D  +RG
Sbjct: 276 NHQRGRILGGCHILVATPGRLKDFVNRG 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 154 WDPEAKAEYPRSNKLVI 204
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +2

Query: 131 HHHISQRHGIQRQKQNTHAATSSSFVKH 214
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 389 NPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFT 285
           NP +R +  G++ +SM    CL++   N      T
Sbjct: 232 NPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 266


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 389 NPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFT 285
           NP +R +  G++ +SM    CL++   N      T
Sbjct: 21  NPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 55


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 389 NPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFT 285
           NP +R +  G++ +SM    CL++   N      T
Sbjct: 21  NPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 55


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 48  SHVNVLLKISIN**NHHDGRVFLWCHPFIITSVRDMGSR 164
           S V+VLL+ ++    +   RV  W  P  +  + D G R
Sbjct: 68  SSVDVLLQEAVFEGTNRKNRVLQWREPEELRRLMDFGVR 106


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 656 ATVRLAQNGLQAVCSFLGILLGRCSF 579
           AT R   N +     FLG  +GR  F
Sbjct: 78  ATFRTIANIILMAVLFLGTFIGRAKF 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,084
Number of Sequences: 336
Number of extensions: 2719
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)