Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P05
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    33   0.26 
04_04_1053 - 30431236-30431428,30431794-30431856,30433497-304336...    29   3.3  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    29   4.3  
01_06_0605 + 30548588-30548732,30549004-30549094,30549470-305495...    29   4.3  
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578...    28   7.5  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   7.5  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 389 NPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 249
           +P T  + T A   S S + C DSPT +T++G  T +     S   T
Sbjct: 3   SPTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>04_04_1053 -
           30431236-30431428,30431794-30431856,30433497-30433615,
           30433696-30433797,30434588-30434677,30434851-30435141,
           30435218-30435373,30435466-30435699
          Length = 415

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -3

Query: 633 WSPGGLFISWHSSWAMQLCL-WHYSTFSLFCPWVHL 529
           W  G  + S+   W    C+ W YS     CPW  L
Sbjct: 331 WFTGSAWASFLQGWGNLACMYWIYSLERYHCPWQQL 366


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 374  VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 222
            V + G  G  + R     SP F    G+   +C D A+  + +  SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188


>01_06_0605 +
           30548588-30548732,30549004-30549094,30549470-30549536,
           30550664-30550778,30550939-30551042
          Length = 173

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 314 LVNQGMYVWTLNSQMRLLHLLLFQGF--GASTLNWTPSPWC 430
           L N+G YV++  +   + H+L+F G   G    N    PWC
Sbjct: 112 LPNRGNYVFSDQTLETIGHILVFPGIPAGEKYFNQLSKPWC 152


>03_05_0536 -
           25357355-25357411,25357463-25357588,25357764-25357892,
           25358015-25358164,25358253-25358373,25360946-25361247
          Length = 294

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
 Frame = +1

Query: 106 EFFYGVTLSSSHQSETWDPEAKA-EYPRSNKLVIRQA------LLGPDA-KPDELNVIQV 261
           E F      SSH    +D EA+A +  RS+  ++ +A      +L   A + D L   Q 
Sbjct: 136 ELFERANGESSHVLRIFDDEAQAMQSARSSSRMLDEAYETGVAILHKYADQRDRLKSAQR 195

Query: 262 EAMSLQEAVKLPVAVLKVGESRHVRLD--IEFPDAPVTFTLVSGF 390
           +A+ +   V L  +VLK+ E RH R+D  I +    +T     GF
Sbjct: 196 KALDILNTVGLSNSVLKLIERRH-RVDKWIAYAGMMITVVRYKGF 239


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +1

Query: 199 VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 330
           ++  A+ GP    DE+N    ++  A+ LQ  ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,422,126
Number of Sequences: 37544
Number of extensions: 293226
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)