Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P03
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    38   3e-04
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   8.4  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 37.9 bits (84), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 94  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT 228
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT 45



 Score = 33.9 bits (74), Expect = 0.005
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 127 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGEYT*NHMIYAK 306
           +F E   L+DK+ DGT+   EL   + +LG+   + EL +++ +   D E    ++ YA 
Sbjct: 86  DFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDC-MDPEDDDGNIPYAP 144

Query: 307 *LK 315
            LK
Sbjct: 145 FLK 147


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 119 RSPSLRRHSHCSTKTAMAPSRPKS 190
           RSP  RR S  +  T+   SRP S
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,609
Number of Sequences: 2352
Number of extensions: 8300
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)