Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_P01
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   183   1e-47
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    26   4.0  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   4.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   5.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   9.2  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  183 bits (446), Expect = 1e-47
 Identities = 81/123 (65%), Positives = 102/123 (82%)
 Frame = +2

Query: 158 PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 337
           P P FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F +   
Sbjct: 8   PAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNA 67

Query: 338 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 517
           +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68  QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127

Query: 518 IID 526
           +ID
Sbjct: 128 LID 130


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 322 ELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRNV 206
           E  +LLRE +N+++  +RE    EE++       R+R +
Sbjct: 166 ETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREI 204


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 155 NPLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 289
           +P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 270 SPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 243  TTYFPL*SDREMSLNSPLTTAVALXLGSGFGHLQ 142
            T  F +  D++M +N  L TAV    GSG G  Q
Sbjct: 1444 TGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQ 1477


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 407 GGLGPMNIPLISDKS 451
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 TFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFT 373
           TF   T +    E  DEF ++G +VLG   D+  T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,481
Number of Sequences: 5004
Number of extensions: 33133
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)