Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 77 2e-15
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 66 3e-12
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 34 0.021
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.0
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.4
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 4.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 5.5
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 7.2
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 7.2
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 25 9.5
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 77.0 bits (181), Expect = 2e-15
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Frame = +3
Query: 144 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 311
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 312 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 491
S+++SEL A + P + +++Q + A++ + D L ++T+LV R+T
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156
Query: 492 LADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSL 638
LAD+ L +VL S + ++ R++ T+ HQ ++ A+ L
Sbjct: 157 LADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPL 205
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 66.5 bits (155), Expect = 3e-12
Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 8/206 (3%)
Frame = +3
Query: 24 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 203
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 204 ADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQWASWSDSELL-PASCA-WV 359
ADG L + Y+ E L + +A + +W + + +++ P + WV
Sbjct: 58 ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117
Query: 360 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQH 539
+ G + + ++ + + + + +LK+ + + RT+LV +R TLAD+ S L F
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNS 177
Query: 540 VLDPSVRSSLINVQRWFLTVAHQPQV 617
++D R L ++ R+++T+ HQ ++
Sbjct: 178 IIDEKTRKELPHLTRYYITMFHQAKL 203
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 33.9 bits (74), Expect = 0.021
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 441 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 617
LD L + TF+ + I++AD+ V++ + H++ L L NV RWF + HQ V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186
Query: 618 SAVVGSLTL 644
S+++
Sbjct: 187 MEAANSMSM 195
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 418 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 510
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 280 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 375
+W+P PV SG T+ C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 51 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 230
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 231 SN 236
SN
Sbjct: 612 SN 613
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 220 STFPSALSNAGTFPAGNFFKKSSDL 146
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 231 SNAIAYYVANESLRGGDLATQARVWQWAS 317
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 328 VNYCLLPVLGSSLTLVSCNSTNRML 402
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 283 WLPKPVSGSGHHGLTVNYCLLPV 351
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 3 LFPKTPTMAAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 140
L+ + A G +YT E+FRA K+L S T V+ FV FGE
Sbjct: 321 LYLEAALPALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 271 AEEIWLPKPVSGSGHH 318
A +IWL PVSG H+
Sbjct: 101 AHQIWLSSPVSGPKHY 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,226
Number of Sequences: 5004
Number of extensions: 63591
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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