Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O20
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 130 7e-31
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 57 8e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 55 2e-08
04_04_0303 + 24269467-24270741 29 1.3
06_03_0784 - 24557089-24557198,24557296-24560725 27 7.2
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 27 7.2
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 27 9.5
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 9.5
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 9.5
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 130 bits (313), Expect = 7e-31
Identities = 57/78 (73%), Positives = 63/78 (80%)
Frame = +3
Query: 45 IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTILC 224
IDLL+P E KHK KRLV PNS+FMDVKC GC+ TTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 225 QPTGGRARLTEGCSFRRK 278
QPTGG+ARLTEGCSFRRK
Sbjct: 67 QPTGGKARLTEGCSFRRK 84
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 56.8 bits (131), Expect = 8e-09
Identities = 26/46 (56%), Positives = 30/46 (65%)
Frame = +3
Query: 45 IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHA 182
IDLL+P E KHK KRLV PNS+FMDVKC GC+ + F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 55.2 bits (127), Expect = 2e-08
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +3
Query: 45 IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCY 155
IDLL+P E KHK KRLV PNS+FMDVKC GC+
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCF 43
>04_04_0303 + 24269467-24270741
Length = 424
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 42 AIDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTIL 221
A+ LLHP L ++PH S +D CP Y+ ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 222 CQPTGGRA 245
C TG A
Sbjct: 198 CSATGAGA 205
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 18 IKAVTMPLAIDLLHPSPASEXRKHKLKRLVPHPNSYFMDVK 140
++ +T+P + HP S H L+ L HP+S FMD +
Sbjct: 617 LRCLTLP---NTNHPLSDSLCSLHHLRMLSVHPHSCFMDTR 654
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 176 TKNCCXLVTARALNIHEIRVRMWH*PLKLMFPPLRRRGRMQQINCERHGYS 24
T +CC + A L+ E RV + PL+++ L RG + Q+N G S
Sbjct: 679 TAHCCFICRAGVLSAGECRVAVGVDPLEVL-DRLPDRGAVHQMNRREAGNS 728
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 385 RWIHCSELEKYHSI 344
RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 114 PNSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTILCQPTGG 239
PN + C GC + ++ V CA CST+ P G
Sbjct: 18 PNGAQSQLVCSGC-RNLLMYPAGATSVCCAVCSTVTAVPAPG 58
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 180 AQRVVVCAGCSTILCQPTGGRARLTEGCS 266
AQ +VC+GC +L P G + CS
Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 57 HPSPASEXRKHKLKRLVPHPNSYFMD 134
HP P S + L+ L HP+S FMD
Sbjct: 662 HPLPESLCSLYHLQMLSVHPHSCFMD 687
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,978,760
Number of Sequences: 37544
Number of extensions: 197481
Number of successful extensions: 424
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -