Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O20
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        29   2.4  
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              27   9.7  
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 207 CSTILCQPTGGRARLTEGCSFRRKQ 281
           C  ++CQ +  ++R T+GC ++R++
Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRRR 254


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 138 KCPGCYKXTTVFSHAQRVVVCAGC 209
           +CP CY  + V  + Q V  C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231


>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 412

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 112 ILTLISWMLSALAVTXLQQFLVTHREWWSALDAQRS 219
           +  L+S+ L  LAV  +   L+ HR W+S +  + +
Sbjct: 207 LCVLVSFYLIPLAVMAVLYALIAHRLWFSRIPVENA 242


>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  LKRLVPHPNSYFMDVKCPGC 152
           ++RLVP  NSY + +   GC
Sbjct: 95  VRRLVPRTNSYILSIDLEGC 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,377,383
Number of Sequences: 59808
Number of extensions: 218191
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)