Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O20
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           135   1e-32
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   132   1e-31
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           126   5e-30
At2g44870.1 68415.m05586 expressed protein                             30   0.65 
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   7.9  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  135 bits (327), Expect = 1e-32
 Identities = 58/78 (74%), Positives = 64/78 (82%)
 Frame = +3

Query: 45  IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTILC 224
           IDLLHP P  E RKHKLKRLV  PNS+FMDVKC GC+  TTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 225 QPTGGRARLTEGCSFRRK 278
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  132 bits (319), Expect = 1e-31
 Identities = 58/78 (74%), Positives = 64/78 (82%)
 Frame = +3

Query: 45  IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTILC 224
           IDLL+P    E RKHKLKRLV  PNS+FMDVKC GC+  TTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 225 QPTGGRARLTEGCSFRRK 278
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  126 bits (305), Expect = 5e-30
 Identities = 54/78 (69%), Positives = 63/78 (80%)
 Frame = +3

Query: 45  IDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTILC 224
           IDLL+P    E RKHKLKRLV  PNS+FMDVKC GC+  TTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 225 QPTGGRARLTEGCSFRRK 278
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 117 NSYFMDVKCPGCYKXTTVFSHAQRVVVCAGCSTILCQPTG 236
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKRQ--FIGYKNQIIRCEGCGNIVWQPQG 212


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 60  PSPASEXRKHKLKRLVPHPNSYFMDV 137
           PSPASE +  KL  + P   +YF D+
Sbjct: 289 PSPASECQTDKLDNIDPDGLTYFEDL 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,327
Number of Sequences: 28952
Number of extensions: 153653
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)