Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O16
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 34 0.062
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 31 0.44
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 29 1.8
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 2.3
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954... 28 4.1
06_02_0040 + 10882897-10884744,10885568-10885666 27 7.1
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 27 7.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 7.1
01_05_0331 - 21057957-21058205,21059213-21059791 27 9.4
01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425,774... 27 9.4
>05_01_0370 + 2909216-2909797
Length = 193
Score = 34.3 bits (75), Expect = 0.062
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +2
Query: 305 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 484
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 485 VATTLSFGSVNKTAG 529
A FG VN AG
Sbjct: 157 AACARGFGGVNPVAG 171
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 31.5 bits (68), Expect = 0.44
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 226 PGLFTVVFTDLTRKE-QSI---GPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVIT 59
P L V+ TDLT E Q I G + D ED++ C S G Q R + GD+IT
Sbjct: 491 PNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIIT 550
Query: 58 RQST 47
+ T
Sbjct: 551 HKET 554
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 80 ISKFKLFPKDFVMANWPALGSIILPNVGGWANGLF 184
ISKF++ P++ V+ PA+G G AN ++
Sbjct: 4 ISKFRIRPENLVLITLPAIGGFYSNTTGSCANHIY 38
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 221 SWYDELKKPSWTPPK 265
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>01_05_0721 +
24594815-24594834,24595207-24595313,24595417-24595472,
24595562-24595810,24595871-24596077,24596157-24596243,
24596331-24596426,24596500-24596715,24596908-24597090,
24597222-24597449
Length = 482
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -1
Query: 409 RPVE*QLYSVQCER*DCIFSKTITFLPDEVRGISHAAVENS 287
R +E + SV ER +FS T+ P+EVR ISH A++ +
Sbjct: 188 RDIERIIASVPKERQTLLFSATV---PEEVRQISHIAMKKN 225
>06_02_0040 + 10882897-10884744,10885568-10885666
Length = 648
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 89 FKLFPKDFVMANWP-ALGSIILPNVGGWANGLFFAGQI 199
FKLF FV + A+ S +LP + W + +F AGQ+
Sbjct: 524 FKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQL 561
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 265 LWGSPAWLL*LIIPGLFTVVFTDLTRKEQSIGPSTDIWEDNR 140
++GSP L + I GL + LT+ S+G S+ I E N+
Sbjct: 1868 IFGSPETRLLMHITGLLPWLGLQLTKDASSLGSSSPIQEQNQ 1909
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 463 DLNECQLEVLQSEENRSPRPVE 398
++ E QL+ L+SEE +SP P+E
Sbjct: 662 NIAELQLQGLESEEIKSPEPIE 683
>01_05_0331 - 21057957-21058205,21059213-21059791
Length = 275
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 215 EKSWYDELKKPSWTPPKWVFGP 280
E W D + PS PP +FGP
Sbjct: 158 ESDWMDTVIDPSHVPPSILFGP 179
>01_01_0979 +
7743243-7744063,7744141-7744324,7745242-7745425,
7746640-7746746
Length = 431
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2
Query: 210 LSLRI*PAKNSPLAHPPTFGRIIEPSAG 127
+S RI PAK SP A +F I+PSAG
Sbjct: 54 VSRRITPAKVSPFAKWKSFVIAIDPSAG 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,512
Number of Sequences: 37544
Number of extensions: 352622
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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