Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O16
(532 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43316| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.036
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15) 31 0.44
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 29 1.8
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_17739| Best HMM Match : DUF885 (HMM E-Value=1.2e-06) 29 1.8
SB_1671| Best HMM Match : Extensin_2 (HMM E-Value=0.44) 29 3.1
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096) 29 3.1
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23) 28 4.1
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 27 9.5
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_43316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 172 GPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVIT 59
GP + W N E RP H ++ G FR+ CGD +T
Sbjct: 64 GPKFEEWSVNAHEARPGHHTQVQGLVEHFRDNCGDSVT 101
>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
Length = 510
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 172 GPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVI 62
GP + W N E RP H ++ G F++QCG ++
Sbjct: 255 GPRFNQWSVNSHEARPGHHTQVQGSVEHFQDQCGGLM 291
>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 495 VVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPS 340
+ AT P+S E + N S+ +++ K+G T YN+ R +VKPS
Sbjct: 1 MAATVMPESNEENKNPSVNTYSLNKVGSCG--IGLLTEYNIPPRKGPTVKPS 50
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 358 CSPTSHIVRSTAATQLVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 516
C P S I+RS ++ L + ++ GLQ + S + G+ G D R C+
Sbjct: 1365 CHPQSWIIRSKISSNLTGEPPKRKLNGLQQVCNNMASVLSGTEGKDNFSRLCR 1417
>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 399
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 14 LYKXCFTLQNLSRLSCNYITALISKFKLFPKDFVMAN 124
LY+ C +++ +R+ +YIT IS L P V +N
Sbjct: 79 LYRECISVREATRVFTSYITRYISHHALLPTPRVTSN 115
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 113 VMANWPALG----SIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPP 262
++ NWP S+++P + W +G+ + W + K+P W PP
Sbjct: 397 ILINWPFQQEYRTSLLIPRIF-WVKDSHMSGECGLGALSRDWVYDRKRPRWRPP 449
>SB_17739| Best HMM Match : DUF885 (HMM E-Value=1.2e-06)
Length = 296
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 175 IGPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVI 62
+GP W N E RP H ++ G+ F++ CG I
Sbjct: 61 MGPKFSEWSVNAHESRPGHHLQVQGKIEHFQDTCGGSI 98
>SB_1671| Best HMM Match : Extensin_2 (HMM E-Value=0.44)
Length = 537
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 172 GPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVI 62
GP + W E RP H ++ G F ++CG VI
Sbjct: 132 GPKYNAWSVAAHEARPGHHTQVQGFSELFSDKCGGVI 168
>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
Length = 1276
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 259 PKVGIWSSLDCSLQQH-GICLLPH--LGGM*WFY*RCSPTSHIVRSTAATQLVLDSYFLR 429
P+ + S+LD + H + LLP L + W + RCS S ++ +L+SY L
Sbjct: 721 PEKAMLSALDTFITLHRNLSLLPRPILKNLLWLFARCSFLHKARPSLTTSETILESYVLA 780
Query: 430 IE 435
++
Sbjct: 781 LK 782
>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
Length = 689
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 172 GPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVI 62
GP W E RP H ++ G + FR+ CG ++
Sbjct: 602 GPKFQEWSVTGHEARPGHHIQMQGLKEHFRDACGGIM 638
>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 181 QSIGPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDV 65
+++GP W N E RP H + G F + CG V
Sbjct: 576 ENMGPKFSEWSVNAHEARPGHHTQAQGFLEHFTDSCGGV 614
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 181 QSIGPSTDIWEDNRTECRPISHYEIFGEQFKFRNQCGDVIT 59
++ GP + E RP H ++ G + FR++CG VI+
Sbjct: 754 ENYGPVYEEMSTCAHEARPGHHTQVQGLEEHFRDKCGGVIS 794
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 504 NDSVVATAAPDSTEISMNASLKSFNPKKIGVQ-DQLSSSCTPYNV 373
NDSV + PD I MN SL+ N + + D++S + + +NV
Sbjct: 1277 NDSVKGVSRPDDFIIKMNLSLRLSNDARHEIAVDKISMTYSWHNV 1321
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 173 NGLFFAGQIRK--DNSEKSWYDELKKPSW 253
NG+F+ +I K +++ W++E+KK SW
Sbjct: 1181 NGIFYNPKIAKLKESNPIRWWNEIKKLSW 1209
>SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 393 CYSTGLGLLFSSD--*RTSSWHSLRSQC 470
CY G+GL F SD +T SW S C
Sbjct: 442 CYRNGIGLTFPSDYTKKTFSWDKYLSLC 469
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 513 TLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 346
T PNDS T + N SL + P I LSS Y + G+ SVK
Sbjct: 6 TNPNDSSKKTKIKNKNVKKQNESLDAKEPVYISDSSNLSSP-NSYQIVGKKEKSVK 60
>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 513 TLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 346
T PNDS T + N SL + P I LSS Y + G+ SVK
Sbjct: 1053 TNPNDSSKKTKIKNKNVKKQNESLDAKEPVYISDSSNLSSP-NSYQIVGKKEKSVK 1107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,285
Number of Sequences: 59808
Number of extensions: 400513
Number of successful extensions: 956
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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