Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O16
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.21 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.48 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   0.64 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   0.64 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   0.64 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 282 AGPNTHFGGVQLGFFNSS 229
           +GP    GGV+LG+FN S
Sbjct: 55  SGPEESSGGVELGWFNDS 72


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 251 WTPPKWVFGPAWTVLYSSMGYASYLIWEECDGF--TEDAVLP 370
           W    ++   AW + Y  M   S L W  C+ +  T++ V P
Sbjct: 72  WMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNP 113


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 317 RHIPCCCREQSKLDQIPTLGES--SLASLTHHTR 222
           +H   CCR       + + GES   L +   HTR
Sbjct: 53  KHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 86


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 317 RHIPCCCREQSKLDQIPTLGES--SLASLTHHTR 222
           +H   CCR       + + GES   L +   HTR
Sbjct: 58  KHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 91


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 317 RHIPCCCREQSKLDQIPTLGES--SLASLTHHTR 222
           +H   CCR       + + GES   L +   HTR
Sbjct: 58  KHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 91


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 21  NXASRFKI*VDCLVITS 71
           N   RFK+  DC+ +TS
Sbjct: 59  NAYVRFKLVTDCIFVTS 75


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 266 WVFGPAWTVLYSSMG 310
           WV GP +  +Y+ +G
Sbjct: 118 WVLGPLFCQIYAMLG 132


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 266 WVFGPAWTVLYSSMG 310
           WV GP +  +Y+ +G
Sbjct: 84  WVLGPLFCQIYAMLG 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,827
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)