Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O16
(532 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47770.1 68415.m05963 benzodiazepine receptor-related contain... 40 0.001
At1g13540.1 68414.m01587 expressed protein 30 1.1
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr... 30 1.1
At2g23610.1 68415.m02817 esterase, putative similar to ethylene-... 29 1.5
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /... 28 3.4
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 28 4.5
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 28 4.5
At3g30280.1 68416.m03824 transferase family protein similar to d... 27 6.0
At5g06110.1 68418.m00679 DNAJ heat shock N-terminal domain-conta... 27 7.9
At4g23500.1 68417.m03387 glycoside hydrolase family 28 protein /... 27 7.9
At2g27230.1 68415.m03272 transcription factor-related contains w... 27 7.9
>At2g47770.1 68415.m05963 benzodiazepine receptor-related contains
weak similarity to Peripheral-type benzodiazepine
receptor (PBR) (PKBS) (Mitochondrial benzodiazepine
receptor) (Swiss-Prot:P30536) [Homo sapiens]
Length = 196
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +2
Query: 239 KKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTP 418
K SW PP W+ MG A++L+W DG L LY Q LL W P
Sbjct: 79 KSSSWIPPLWLLHTTCLASSGLMGLAAWLVW--VDGGFHKKPNALYLYLAQFLLCLVWDP 136
Query: 419 IFF 427
+ F
Sbjct: 137 VTF 139
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = +2
Query: 200 RKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTL 379
+K+ S + +Y P PP ++ WTV YS + + + ++ G + L L
Sbjct: 150 QKEPSSRCYYATSVAPDGVPPWFLRKKEWTVEYSR--FQDFELRDDAKGLITELRTELPL 207
Query: 380 YGVQLLLNWSWTPIFF 427
G+ ++ + P F
Sbjct: 208 LGMSTVVGKWYVPFIF 223
>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains S-locus glycoprotein family domain,
Pfam:PF00954
Length = 901
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 227 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQAN 123
++TF C CL GF+P+ HW + GG + + +A+
Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRAS 404
>At2g23610.1 68415.m02817 esterase, putative similar to
ethylene-induced esterase [Citrus sinensis] GI:14279437,
polyneuridine aldehyde esterase [Rauvolfia serpentina]
GI:6651393; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 263
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 182 FFAGQIRKDNSEKSWYDEL---KKPSWTPPKWVFGP 280
F ++RK+ S + W D + +KP + W+FGP
Sbjct: 121 FVWDKLRKETSREEWLDTVFTSEKPDFPSEFWIFGP 156
>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 449
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 313 ISHAAVENSPSWTKYPLWGS 254
+SH ++NSP WT +P++ S
Sbjct: 195 VSHVVLQNSPFWTLHPVYCS 214
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 176 GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 346
G G++ K K D+ +PS P PA + S+ YAS ++ EE +G
Sbjct: 69 GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 176 GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 346
G G++ K K D+ +PS P PA + S+ YAS ++ EE +G
Sbjct: 69 GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124
>At3g30280.1 68416.m03824 transferase family protein similar to
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034], alcohol
acyltransferase [Fragaria x
ananassa][GI:10121328][PMID:10810141]
Length = 443
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = -1
Query: 283 SWTKYPL------WGSPAWLL*LIIPGLFTVVFTDLTRKEQSIGPSTDIWEDN 143
SW K PL WGSP W+ + P L V ++ Q I + E+N
Sbjct: 369 SWCKLPLYEASFGWGSPVWIAGNVAPMLENVTMLIDSKDGQGIEAFVTLPEEN 421
>At5g06110.1 68418.m00679 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 208 VFTDLTRKEQSIGPSTDIWEDN-RTECRPISHYEIFGEQFK 89
V D T++ I STD ++D T+C P +++FG FK
Sbjct: 168 VLMDSTKRR--IFDSTDEFDDKVPTDCAPQDFFKVFGPAFK 206
>At4g23500.1 68417.m03387 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 495
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 313 ISHAAVENSPSWTKYPLWGSPAWLL*LIIPGLFTVVFTD 197
IS+ NSPSW +P++ S ++ L I TV TD
Sbjct: 217 ISNLTFLNSPSWHIHPVYSSNIYIQGLTILAPVTVPNTD 255
>At2g27230.1 68415.m03272 transcription factor-related contains weak
similarity to anthocyanin 1 (GI:10998404) [Petunia x
hybrida]; identical to cDNA bHLH transcription factor
(bHLH delta gene) gi:32563001
Length = 650
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 263 KWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGV 388
+W + W + + +S LIWEEC TE + P L G+
Sbjct: 17 QWSYAVFWKIGCQN---SSLLIWEECYNETESSSNPRRLCGL 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,377
Number of Sequences: 28952
Number of extensions: 280904
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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