Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O14
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 66 2e-11
SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_44217| Best HMM Match : Rpr2 (HMM E-Value=5.4) 29 3.0
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 28 5.3
SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 28 5.3
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 6.9
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 65.7 bits (153), Expect = 2e-11
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = +2
Query: 287 VGSSLHTQVFHVPYEER--KLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFL 460
+ S+ TQVF VP EER KL + TFG+ C I TGA IE+S KD SLT +
Sbjct: 113 IRSTTVTQVFRVPLEERRYKLFHEATFGDERQHSICRDIMAKTGASIEVSLGKDLSLTIM 172
Query: 461 ITGKQSAVLEARRQILT 511
+TGK V +ARR +L+
Sbjct: 173 VTGKPDTVAKARRLVLS 189
>SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 311 VFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTF 457
VF V + E++ N+ TFG+ R C KD+ A TSK LT+
Sbjct: 33 VFSVKFHEKR-SNSTTFGQIPPSRQCTDAMKDSLASALRHTSKQAQLTY 80
>SB_192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +1
Query: 22 RTLKTKFQYCNDSARTR 72
R +KT++QYC+++A+TR
Sbjct: 147 RRIKTRYQYCHNTAKTR 163
>SB_44217| Best HMM Match : Rpr2 (HMM E-Value=5.4)
Length = 106
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +1
Query: 22 RTLKTKFQYCNDSARTR 72
R +KT++QYC+++A+TR
Sbjct: 72 RRIKTRYQYCHNTAKTR 88
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 158 VEEMNNVGYENNVSFAYDDLFPALPHSQPL 247
++ + + + V FA D +FP LP +QP+
Sbjct: 731 IKNFHCISCDKPVEFARDGMFPPLPSAQPM 760
>SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 193 IVLISNIIHFFNMHGYIRMNGYHISNHHGLLMHHFCLLRQSLSAPSRYS 47
IV S ++HF N + + I+ +M FC R LS P R++
Sbjct: 245 IVYCSKLLHFSNSIANVLIYTLRINEFKHTVMKIFCQHRPHLSIPPRHA 293
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 269 PVVYYVAQGAGNAAMLEIGHRRQMTHCSHIQHYSFLQHAWVHQDERVSHLQ 117
PV+ +Q +A ++ H R ++ SH++H S H VH SH++
Sbjct: 164 PVMSATSQPPVMSATSQLSHVRHLSTSSHVRHLSTSSH--VHHLSTSSHVR 212
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 389 HSITKDTGAHIEISTSKD---GSLTFLITGKQSAVLEARRQI 505
++I + TGAHI+I TS+ GS I G A +A I
Sbjct: 933 NAIRETTGAHIDIDTSRQKSTGSCIITIKGPADATRQAHHLI 974
>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 228 CRIPSPLCNVIYNRLQTNFELA 293
C IP PLC ++ R+ T+F A
Sbjct: 556 CTIPVPLCAILRQRVSTDFSSA 577
>SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 118 NHHGLLMHHFCLLRQSLSAPSRYSIEI--LFSMC 23
NH L+ HFCL+ SL S+ +I I L ++C
Sbjct: 163 NHAEKLLQHFCLMFSSLYPASKETINIHSLVNIC 196
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 498 RRASRTALCFPVIRKVRLPSLLVDISMCAPVSLVMEWQVLKDS 370
R + A C P R + L L+ + C P+S + + VLK S
Sbjct: 115 RHKNLAAHCSPCFRDIALGDLIT-VGQCRPLSKTVRFNVLKVS 156
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 27.1 bits (57), Expect = 9.2
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 251 QRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIE-I 427
+RN T V HT FH P +ER A T R H K GA I+ +
Sbjct: 435 KRNTCGVTRNPVVALIKHT-TFHFPSQERSTKKAKTATAKNHERAWHRY-KPNGAEIKAL 492
Query: 428 STSKDGSLTFLITGKQS 478
++ GS L+ +S
Sbjct: 493 NSIPQGSQNMLLVDSES 509
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,449
Number of Sequences: 59808
Number of extensions: 378806
Number of successful extensions: 937
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -