Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O14
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00330.1 68417.m00042 protein kinase family protein contains ...    30   1.1  
At1g06250.1 68414.m00661 lipase class 3 family protein similar t...    29   1.4  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    29   1.9  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    29   2.5  
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    28   3.2  
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    28   3.2  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   7.5  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    27   7.5  
At5g45660.1 68418.m05614 expressed protein                             27   9.9  
At4g03090.1 68417.m00417 expressed protein                             27   9.9  
At3g45110.1 68416.m04869 hypothetical protein                          27   9.9  
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa...    27   9.9  

>At4g00330.1 68417.m00042 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 411

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 248 QGAGNAAMLEIGHRRQMTHCSHIQHYSFLQHAWVHQDERV 129
           QGA    M EI    Q+TH S +++Y F+    VH DE++
Sbjct: 158 QGADAEFMSEIQTLAQVTHLSLVKYYGFV----VHNDEKI 193


>At1g06250.1 68414.m00661 lipase class 3 family protein similar to
           lipase GB:AAD01804 GI:4103627 from [Dianthus
           caryophyllus]; contains Pfam profile PF01764: Lipase
          Length = 423

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 68  QGLPEETKMMHQQSMMVGDVIPVHPDVP---MHVEEMNNVGYE 187
           +G+P+  K++  Q+   G + P+ PD+    +H  EM+ VGY+
Sbjct: 3   EGIPKRWKVLSGQNKWKGLLDPLDPDLRRYIIHYGEMSQVGYD 45


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 462 IRKVRLPSLLVDISMCAPVSLVMEWQVLKDSPSPKVLALSSFRSSY 325
           +R+++  S+  +  MC P + V EWQ +  SP  KVL   + +  +
Sbjct: 457 VREIKFRSIC-NSPMCPPDTAVTEWQHVVLSPDKKVLVFETVQQPH 501


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 317 HVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSK 439
           H+   E++L +A+        RT HS T+D   H + S+ +
Sbjct: 819 HIQETEKRLSSASDLKASAGCRTVHSETQDEDVHEDFSSEE 859


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +2

Query: 137 HPDVPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQATNKLRVGSSLHTQVF 316
           H     + EE+NN  YE+NV+  YDD F + P      Q   Q++    +      T+++
Sbjct: 78  HETTDNNNEELNNNKYEDNVN--YDDSF-STPSLSETAQ--TQESYKNYKESYPKTTEIY 132

Query: 317 HVPYEERKLDNANTFG 364
               +    +N+N +G
Sbjct: 133 DNNKDTSYYENSNAYG 148


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 154 HGYIRMNGYHISNHHGLLMHHF 89
           H  ++ NG  +S HH +L HHF
Sbjct: 28  HHQLQENGSLVSGHHQVLSHHF 49


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 161  QHAWVHQDERVSHLQPSWIADASFLSPPAVLVR 63
            Q+ W   D+R  HL P+WI  A    PP ++ +
Sbjct: 922  QYLWYEGDKR--HLFPNWIKPADSEPPPLLVYK 952


>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 161  QHAWVHQDERVSHLQPSWIADASFLSPPAVLVR 63
            Q+ W   D+R  HL P+WI  A    PP ++ +
Sbjct: 970  QYLWYEGDKR--HLFPNWIKPADSEPPPLLVYK 1000


>At5g45660.1 68418.m05614 expressed protein
          Length = 226

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -3

Query: 372 SPSPKVLALSSFRSSYGTWKT*VCSEEPTRSLFVACCILRCTRGWECGNAGNRS 211
           SPSPK +   +F  S+  +KT +     +RSL +    LR +RG   G++  R+
Sbjct: 25  SPSPKFVNAFTFPFSFTQYKTLI---SISRSLLLRVANLRASRGDALGSSRVRA 75


>At4g03090.1 68417.m00417 expressed protein 
          Length = 877

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 299 LHTQVFHVPYEERKLDNANTFGEGESLRTCHSI 397
           LH+   H P+ ER   N    G+G  LR   SI
Sbjct: 227 LHSLCQHKPFRERVAKNKELCGKGGVLRLAQSI 259


>At3g45110.1 68416.m04869 hypothetical protein 
          Length = 120

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 184 ISNIIHFFNMHGYIRMNGYHISNHHGLL 101
           I N IH+ +  G +  +  +I+ HHGL+
Sbjct: 24  IDNSIHYADTRGVVSHHRENITGHHGLV 51


>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 195

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 445 QSNFPYHWKAERCSRSAATN 504
           + N PYHW   +CS  A+ N
Sbjct: 172 KGNAPYHWLYHKCSSCASYN 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,290
Number of Sequences: 28952
Number of extensions: 253049
Number of successful extensions: 759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)