Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O12
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 48 4e-07
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 36 0.002
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.047
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 28 0.58
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 26 2.3
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 25 3.1
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 4.1
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 5.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 7.1
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 9.4
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 48.4 bits (110), Expect = 4e-07
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHL 266
VGRNGSGKSNFF AI+FVLSD ++HL
Sbjct: 31 VGRNGSGKSNFFAAIRFVLSDAYTHL 56
Score = 41.5 bits (93), Expect = 4e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 277 QRLALLHEGTGPRVISAFVEIISDNSDNRIP 369
+R ALLHEG G V+SA+VE+ N+DNR P
Sbjct: 60 ERQALLHEGPGATVMSAYVEVTFANADNRFP 90
Score = 31.5 bits (68), Expect = 0.047
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 122 KAFKSYREQIVVEPFDKRHNVVSG 193
+ FKSY++ V+EP HNV+ G
Sbjct: 9 QGFKSYKDYTVIEPLSPHHNVIVG 32
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 36.3 bits (80), Expect = 0.002
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPDSAAGPTARG 302
+G NG+GKSN AI FVL + SHLR + RG
Sbjct: 31 IGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELIYRG 68
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.5 bits (68), Expect = 0.047
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPDSAA 284
VG NGSGKSN A+ FV S LR A+
Sbjct: 154 VGPNGSGKSNVIDALLFVFGFRASKLRQSKAS 185
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.9 bits (59), Expect = 0.58
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +3
Query: 192 GRNGSGKSNFFHAIQFVL 245
G NGSGKSN AI FVL
Sbjct: 32 GLNGSGKSNILDAICFVL 49
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 229 PFNLYSAMNSPISDLTQRLALLHEGTGPRVISAFVEIISDNSDNRIPIE 375
P+N Y+ N ++ +Q +H+ PR+ +D + N+IP+E
Sbjct: 15 PYNTYTRPNYSPNNGSQSNNTVHQYQPPRMPPPSTRPQTDGNSNQIPME 63
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 223 STPFNLYSAMNSPISDLTQRLALLHEGTGPRVISAFVEIISDNSDN 360
S+P + SA + +S R+ L G GPRV++ E + D S N
Sbjct: 342 SSPVTVDSAAANIVSSGISRVILTRVGNGPRVLT-IDESLIDASGN 386
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 179 YVVYQKALQQFALGNS*MPWIITCFMCSCLR 87
++VY++++ + + + + I+TCF C C R
Sbjct: 69 WLVYEQSVLESPILSPELDRILTCFRCLCRR 99
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 5.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 87 TKTTAHKTGNNPRHSRVTESKLL*SLLINDIM*SVGRNGSGKSNFFHAIQ-FVLSDEFSH 263
T+ +K G P T+ K L S ND++ + S K FF A ++++ FS
Sbjct: 14 TRVLKNKLGKIPDIDISTDGKYLLSASTNDVLLVWDLHTSNKVAFFEAPSVWIMTCAFSP 73
Query: 264 LRPDSAAG 287
AAG
Sbjct: 74 STKSIAAG 81
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +3
Query: 216 NFFHAIQFVLSDEFSHLRPDSAA 284
+F+H + ++LS+ FS+ R D+++
Sbjct: 862 SFYHPLHWMLSNLFSYCRVDASS 884
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 37 MSRHNKTLFSGVFSXFKRRQLHIKQV 114
+S N T+F F K LH KQ+
Sbjct: 202 ISNENDTIFKANFQQNKYESLHAKQI 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,994
Number of Sequences: 5004
Number of extensions: 30321
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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