Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O12
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    56   7e-09
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    34   0.034
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733...    27   5.1  
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606...    27   6.7  
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052...    26   8.9  

>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
 Frame = +1

Query: 97  LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPFNLYSAMNSPISDLT 276
           ++IK+V+I+G +          F       + +V+V A  +  +  N + A+   +SD+ 
Sbjct: 1   MYIKKVVIEGFKSYREEISTEPF-----SPKVNVVVGANGSGKS--NFFHAIRFVLSDMF 53

Query: 277 QRL------ALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
           Q L      ALLHEG G  V+SAFVEI+ DNSDNRIP++ +
Sbjct: 54  QNLRSEDRGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKE 94


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 34.3 bits (75), Expect = 0.034
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
           +G NG+GKSN   AI FVL    +HLR
Sbjct: 43  IGPNGAGKSNLMDAISFVLGVRSAHLR 69


>05_05_0348 +
           24271764-24271898,24273055-24273144,24273205-24273303,
           24273725-24273826,24273912-24274088,24274193-24274398,
           24274491-24274575,24274641-24274798,24274873-24274948,
           24275117-24275245,24275313-24275457,24275561-24275691,
           24276183-24276335,24276447-24276636,24277006-24277139,
           24277248-24277406,24277659-24277964,24278040-24278216,
           24278446-24278529,24278592-24278822,24278913-24279002,
           24279090-24279211,24279293-24279448,24279477-24279635,
           24279705-24279765,24280004-24280138,24280384-24280471,
           24280548-24280620,24280883-24280994,24281691-24281711
          Length = 1327

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHL 266
           VG NGSGKSN   A+ FV       L
Sbjct: 51  VGPNGSGKSNVIDAMLFVFGKRAKQL 76


>01_06_1713 -
           39359558-39359590,39360000-39360074,39360437-39360662,
           39360792-39360880,39360960-39361053,39361134-39361318,
           39361415-39361582,39361682-39361822,39362327-39362545,
           39362628-39362744,39363154-39363248,39363662-39363743,
           39363864-39363926,39364157-39364216,39364312-39364476,
           39364574-39364759,39364890-39365180,39365262-39365405,
           39365492-39366172,39367045-39367362
          Length = 1143

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 192 GRNGSGKSNFFHAIQFVL 245
           G NGSGKSN   +I FVL
Sbjct: 32  GLNGSGKSNILDSICFVL 49


>05_04_0340 -
           20404703-20404771,20404908-20405093,20405191-20405292,
           20405400-20405464,20405551-20405631,20405983-20406055,
           20406147-20406248,20406437-20406556,20406690-20406800,
           20406889-20406960,20407228-20407341,20407423-20407521,
           20408472-20408849
          Length = 523

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 310 GLFPRAVGPAAESGL-RWENSSLSTN*MAWKKLLLPEPLRPTDYIMSFIK 164
           G  P   G  + SG  R    + S   + +K + L  PL P + IMSFI+
Sbjct: 84  GASPGKAGRVSGSGRGRGRGGAASPMGVTFKAVPLQSPLPPVEEIMSFIR 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,192
Number of Sequences: 37544
Number of extensions: 182735
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)