Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O12
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24968| Best HMM Match : SMC_N (HMM E-Value=0.00014)                 54   4e-08
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)              28   2.3  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     27   5.2  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       26   9.2  

>SB_24968| Best HMM Match : SMC_N (HMM E-Value=0.00014)
          Length = 117

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = +1

Query: 298 EGTGPRVISAFVEIISDNSDNRIPIEXD 381
           EGTGPRV+SAFVE+I DNSDNR+PIE D
Sbjct: 19  EGTGPRVVSAFVELIFDNSDNRLPIEKD 46


>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
          Length = 474

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAI 233
           VGRNGSGKS+  HA+
Sbjct: 99  VGRNGSGKSSVIHAL 113


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 190  TDYIMSFIKRLYNNLLSVTLECLGLLP 110
            TD I+  + RL++ +LS    C+GLLP
Sbjct: 949  TDVILENVPRLFSAVLSRLGTCVGLLP 975


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAIQFV 242
           VG NGSGKSN   A+ FV
Sbjct: 64  VGPNGSGKSNVIDAMLFV 81


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 192 GRNGSGKSNFFHAIQFVLS-DEFSHLRPDS 278
           G NGSGKSN   +I F+L     S +R  S
Sbjct: 32  GLNGSGKSNILDSICFLLGISNLSQVRASS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,294
Number of Sequences: 59808
Number of extensions: 223934
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)