Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O12
         (383 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    64   2e-12
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    37   2e-04
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.31 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   0.72 
AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450 pr...    23   3.8  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    22   6.7  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    22   8.9  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 63.7 bits (148), Expect = 2e-12
 Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
 Frame = +1

Query: 97  LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPFNLYSAMNSPISD-- 270
           +HIKQVIIQG +          F       + +V+V      S   N + A+   +SD  
Sbjct: 1   MHIKQVIIQGFKSYREQTVVEPF-----DKRHNVVVGR--NGSGKSNFFYAIQFVLSDEF 53

Query: 271 ----LTQRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
                 QR ALLHEGTGPR +SA+VEII DNSDNR+PI+ +
Sbjct: 54  THLRPEQRQALLHEGTGPRAMSAYVEIIFDNSDNRVPIDKE 94



 Score = 62.1 bits (144), Expect = 7e-12
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPDSAAGPTARGNRP 311
           VGRNGSGKSNFF+AIQFVLSDEF+HLRP+        G  P
Sbjct: 31  VGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQALLHEGTGP 71



 Score = 46.4 bits (105), Expect = 4e-07
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +2

Query: 122 KAFKSYREQIVVEPFDKRHNVVSG 193
           + FKSYREQ VVEPFDKRHNVV G
Sbjct: 9   QGFKSYREQTVVEPFDKRHNVVVG 32


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
           +G NGSGKSNF  AI FV+ ++ S LR
Sbjct: 37  IGPNGSGKSNFMDAISFVMGEKTSSLR 63


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 192 GRNGSGKSNFFHAIQFVLS-DEFSHLRPDS 278
           G NG+GKSN   +I FVL      H+R  S
Sbjct: 32  GLNGTGKSNILDSICFVLGISNLVHVRATS 61


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
           +G NGSGKSN   ++ FV       +R
Sbjct: 100 IGPNGSGKSNVIDSMLFVFGYRAQKIR 126



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 FKSYREQIVVEPFDKRHNVVSG 193
           FKSY   +++ PF +R + + G
Sbjct: 80  FKSYAGHVMLGPFHQRFSSIIG 101


>AY028784-1|AAK32958.2|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 211 LPEPLRPTDYIMSFIKRLYNNLLS 140
           +P+ L+PT +    I++LY  L S
Sbjct: 44  VPDTLKPTIHFAYIIEKLYKRLKS 67


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +3

Query: 204 SGKSNFFHAIQFVLSDEFSHLRPD 275
           S   N+F ++   + D + H++P+
Sbjct: 124 SSDRNYFESLSAFIXDAYMHMKPN 147


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 189 VGRNGSGKSNFFHAI 233
           VG+NGSGKS    A+
Sbjct: 113 VGKNGSGKSAILAAM 127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,343
Number of Sequences: 2352
Number of extensions: 7511
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29501847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)