Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O12
(383 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047324-1|AAH47324.1| 1217|Homo sapiens structural maintenance ... 70 3e-12
AL359260-2|CAI16576.1| 1217|Homo sapiens structural maintenance ... 69 7e-12
AF020043-1|AAC14893.1| 1217|Homo sapiens chromosome-associated p... 69 7e-12
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 36 0.034
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 36 0.034
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 36 0.034
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 36 0.034
BC080185-1|AAH80185.1| 417|Homo sapiens SMC1A protein protein. 36 0.034
BC064368-1|AAH64368.1| 847|Homo sapiens SMC1A protein protein. 36 0.034
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 36 0.034
BC126208-1|AAI26209.1| 1161|Homo sapiens SMC1B protein protein. 34 0.18
AL021391-1|CAI18928.1| 1235|Homo sapiens structural maintenance ... 34 0.18
AL008718-2|CAI17945.1| 1235|Homo sapiens structural maintenance ... 34 0.18
AJ504806-1|CAD43404.2| 1235|Homo sapiens SMC1beta protein protein. 34 0.18
BC132750-1|AAI32751.1| 264|Homo sapiens hypothetical protein LO... 31 1.3
BC132748-1|AAI32749.1| 264|Homo sapiens hypothetical protein LO... 31 1.3
AL158063-3|CAH72181.1| 264|Homo sapiens protein ( Human DNA seq... 31 1.3
BC122527-1|AAI22528.1| 377|Homo sapiens progestin and adipoQ re... 30 2.9
BC118666-1|AAI18667.1| 377|Homo sapiens progestin and adipoQ re... 30 2.9
AY424287-1|AAR08375.1| 377|Homo sapiens progestin and adipoQ re... 30 2.9
AK123932-1|BAC85729.1| 377|Homo sapiens protein ( Homo sapiens ... 30 2.9
BC007570-1|AAH07570.1| 649|Homo sapiens FBF1 protein protein. 29 6.8
>BC047324-1|AAH47324.1| 1217|Homo sapiens structural maintenance of
chromosomes 3 protein.
Length = 1217
Score = 69.7 bits (163), Expect = 3e-12
Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Frame = +1
Query: 97 LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPFNLYSAMNSPISDL- 273
++IKQVIIQG + F S+ +V+V + + NL+ A+ +SD
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPF-----SSKHNVIVGRNGSGKS--NLFYAIQFVLSDEF 53
Query: 274 -----TQRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
QRLALLHEGTGPRVISAFVEII DNSDNR+PI+ +
Sbjct: 54 SHLRPEQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKE 94
>AL359260-2|CAI16576.1| 1217|Homo sapiens structural maintenance of
chromosomes 3 protein.
Length = 1217
Score = 68.5 bits (160), Expect = 7e-12
Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +1
Query: 97 LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPF--NLYSAMNSPISD 270
++IKQVIIQG + F S+ +V+V + + F + ++ S
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPF-----SSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55
Query: 271 LT--QRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
L QRLALLHEGTGPRVISAFVEII DNSDNR+PI+ +
Sbjct: 56 LRPEQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKE 94
>AF020043-1|AAC14893.1| 1217|Homo sapiens chromosome-associated
polypeptide protein.
Length = 1217
Score = 68.5 bits (160), Expect = 7e-12
Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +1
Query: 97 LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPF--NLYSAMNSPISD 270
++IKQVIIQG + F S+ +V+V + + F + ++ S
Sbjct: 1 MYIKQVIIQGFRSYRDQTIVDPF-----SSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55
Query: 271 LT--QRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
L QRLALLHEGTGPRVISAFVEII DNSDNR+PI+ +
Sbjct: 56 LRPEQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKE 94
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural
maintenance of chromosomes 1-like 1 protein.
Length = 1233
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>BC080185-1|AAH80185.1| 417|Homo sapiens SMC1A protein protein.
Length = 417
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>BC064368-1|AAH64368.1| 847|Homo sapiens SMC1A protein protein.
Length = 847
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 36.3 bits (80), Expect = 0.034
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S+LR
Sbjct: 31 IGPNGSGKSNLMDAISFVLGEKTSNLR 57
>BC126208-1|AAI26209.1| 1161|Homo sapiens SMC1B protein protein.
Length = 1161
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN A+ FV+ ++ ++LR
Sbjct: 31 IGPNGSGKSNVMDALSFVMGEKIANLR 57
>AL021391-1|CAI18928.1| 1235|Homo sapiens structural maintenance of
chromosomes 1B protein.
Length = 1235
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN A+ FV+ ++ ++LR
Sbjct: 31 IGPNGSGKSNVMDALSFVMGEKIANLR 57
>AL008718-2|CAI17945.1| 1235|Homo sapiens structural maintenance of
chromosomes 1B protein.
Length = 1235
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN A+ FV+ ++ ++LR
Sbjct: 31 IGPNGSGKSNVMDALSFVMGEKIANLR 57
>AJ504806-1|CAD43404.2| 1235|Homo sapiens SMC1beta protein protein.
Length = 1235
Score = 33.9 bits (74), Expect = 0.18
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN A+ FV+ ++ ++LR
Sbjct: 31 IGPNGSGKSNVMDALSFVMGEKIANLR 57
>BC132750-1|AAI32751.1| 264|Homo sapiens hypothetical protein
LOC196541 protein.
Length = 264
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 160 LYNNLLSVTLECLGLLPVLCAVVF-V*IXKKLPKTKFYYD 44
L NLL TL+C LP + +V+ + K PK+ FYYD
Sbjct: 149 LQYNLLKNTLQCTAHLPEVKELVWGEDLDKNFPKSAFYYD 188
>BC132748-1|AAI32749.1| 264|Homo sapiens hypothetical protein
LOC196541 protein.
Length = 264
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 160 LYNNLLSVTLECLGLLPVLCAVVF-V*IXKKLPKTKFYYD 44
L NLL TL+C LP + +V+ + K PK+ FYYD
Sbjct: 149 LQYNLLKNTLQCTAHLPEVKELVWGEDLDKNFPKSAFYYD 188
>AL158063-3|CAH72181.1| 264|Homo sapiens protein ( Human DNA
sequence from clone RP11-29B2 on chromosome 13 Contains
the TPP2 gene for tripeptidyl peptidase II, a novel gene
and 2 CpG ).
Length = 264
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 160 LYNNLLSVTLECLGLLPVLCAVVF-V*IXKKLPKTKFYYD 44
L NLL TL+C LP + +V+ + K PK+ FYYD
Sbjct: 149 LQYNLLKNTLQCTAHLPEVKELVWGEDLDKNFPKSAFYYD 188
>BC122527-1|AAI22528.1| 377|Homo sapiens progestin and adipoQ
receptor family member IX protein.
Length = 377
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -2
Query: 301 PRAVGPAAESGLRWENSSLSTN*MAWKKLLLPEPLRPTDYIMSFIKRLYNNLLSVTLECL 122
P A PAA R +S+ S + A K LL P D++ FI Y L ECL
Sbjct: 15 PPAPAPAASGAARNSHSAASRDPPASAKPLLRWDEVPDDFVECFILSGYRRLPCTAQECL 74
>BC118666-1|AAI18667.1| 377|Homo sapiens progestin and adipoQ
receptor family member IX protein.
Length = 377
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -2
Query: 301 PRAVGPAAESGLRWENSSLSTN*MAWKKLLLPEPLRPTDYIMSFIKRLYNNLLSVTLECL 122
P A PAA R +S+ S + A K LL P D++ FI Y L ECL
Sbjct: 15 PPAPAPAASGAARNSHSAASRDPPASAKPLLRWDEVPDDFVECFILSGYRRLPCTAQECL 74
>AY424287-1|AAR08375.1| 377|Homo sapiens progestin and adipoQ
receptor family member IX protein.
Length = 377
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -2
Query: 301 PRAVGPAAESGLRWENSSLSTN*MAWKKLLLPEPLRPTDYIMSFIKRLYNNLLSVTLECL 122
P A PAA R +S+ S + A K LL P D++ FI Y L ECL
Sbjct: 15 PPAPAPAASGAARNSHSAASRDPPASAKPLLRWDEVPDDFVECFILSGYRRLPCTAQECL 74
>AK123932-1|BAC85729.1| 377|Homo sapiens protein ( Homo sapiens
cDNA FLJ41938 fis, clone PERIC2006035. ).
Length = 377
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -2
Query: 301 PRAVGPAAESGLRWENSSLSTN*MAWKKLLLPEPLRPTDYIMSFIKRLYNNLLSVTLECL 122
P A PAA R +S+ S + A K LL P D++ FI Y L ECL
Sbjct: 15 PPAPAPAASGAARNSHSAASRDPPASAKPLLRWDEVPDDFVECFILSGYRRLPCTAQECL 74
>BC007570-1|AAH07570.1| 649|Homo sapiens FBF1 protein protein.
Length = 649
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2
Query: 334 QQKPK*L*GLFPRAVGPAAES 272
Q P L GLFPRA GPAA S
Sbjct: 561 QDLPSSLVGLFPRAQGPAASS 581
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,147,175
Number of Sequences: 237096
Number of extensions: 1065043
Number of successful extensions: 2763
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2754
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -