Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O12
(383 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U30492-1|AAC47078.1| 1231|Drosophila melanogaster Cap protein. 62 3e-10
BT023768-1|AAZ41776.1| 1200|Drosophila melanogaster RE14758p pro... 61 4e-10
AE014298-2425|AAF48625.2| 1200|Drosophila melanogaster CG9802-PA... 61 4e-10
AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro... 37 0.008
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein... 37 0.008
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu... 37 0.008
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA... 37 0.008
AE014298-2655|AAF48792.1| 4081|Drosophila melanogaster CG7092-PA... 27 6.3
AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin su... 27 8.4
AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4 ... 27 8.4
AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p pro... 27 8.4
AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-P... 27 8.4
>U30492-1|AAC47078.1| 1231|Drosophila melanogaster Cap protein.
Length = 1231
Score = 61.7 bits (143), Expect = 3e-10
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +1
Query: 94 QLHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPFNLYSAMNSPISDL 273
++HIKQ+IIQG + F + +V+V + + N + A+ +SD
Sbjct: 31 KMHIKQIIIQGFKSYKDQTVVEPF-----DKRHNVVVGRNGSGKS--NFFYAIQFVLSDE 83
Query: 274 ------TQRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
QR +LLHEGTG RVISA+VEII DNSDNR+PI+ +
Sbjct: 84 FTHLRPEQRQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKE 125
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPD 275
VGRNGSGKSNFF+AIQFVLSDEF+HLRP+
Sbjct: 62 VGRNGSGKSNFFYAIQFVLSDEFTHLRPE 90
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2
Query: 122 KAFKSYREQIVVEPFDKRHNVVSG 193
+ FKSY++Q VVEPFDKRHNVV G
Sbjct: 40 QGFKSYKDQTVVEPFDKRHNVVVG 63
>BT023768-1|AAZ41776.1| 1200|Drosophila melanogaster RE14758p
protein.
Length = 1200
Score = 61.3 bits (142), Expect = 4e-10
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Frame = +1
Query: 97 LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPFNLYSAMNSPISDL- 273
+HIKQ+IIQG + F + +V+V + + N + A+ +SD
Sbjct: 1 MHIKQIIIQGFKSYKDQTVVEPF-----DKRHNVVVGRNGSGKS--NFFYAIQFVLSDEF 53
Query: 274 -----TQRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
QR +LLHEGTG RVISA+VEII DNSDNR+PI+ +
Sbjct: 54 THLRPEQRQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKE 94
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPD 275
VGRNGSGKSNFF+AIQFVLSDEF+HLRP+
Sbjct: 31 VGRNGSGKSNFFYAIQFVLSDEFTHLRPE 59
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2
Query: 122 KAFKSYREQIVVEPFDKRHNVVSG 193
+ FKSY++Q VVEPFDKRHNVV G
Sbjct: 9 QGFKSYKDQTVVEPFDKRHNVVVG 32
>AE014298-2425|AAF48625.2| 1200|Drosophila melanogaster CG9802-PA,
isoform A protein.
Length = 1200
Score = 61.3 bits (142), Expect = 4e-10
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Frame = +1
Query: 97 LHIKQVIIQGIQELPRANCCRAF**TT*CSQWDVMVQARVTFSTPFNLYSAMNSPISDL- 273
+HIKQ+IIQG + F + +V+V + + N + A+ +SD
Sbjct: 1 MHIKQIIIQGFKSYKDQTVVEPF-----DKRHNVVVGRNGSGKS--NFFYAIQFVLSDEF 53
Query: 274 -----TQRLALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
QR +LLHEGTG RVISA+VEII DNSDNR+PI+ +
Sbjct: 54 THLRPEQRQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKE 94
Score = 60.9 bits (141), Expect = 6e-10
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPD 275
VGRNGSGKSNFF+AIQFVLSDEF+HLRP+
Sbjct: 31 VGRNGSGKSNFFYAIQFVLSDEFTHLRPE 59
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2
Query: 122 KAFKSYREQIVVEPFDKRHNVVSG 193
+ FKSY++Q VVEPFDKRHNVV G
Sbjct: 9 QGFKSYKDQTVVEPFDKRHNVVVG 32
>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p
protein.
Length = 1238
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSNF AI FV+ ++ S LR
Sbjct: 54 IGPNGSGKSNFMDAISFVMGEKTSSLR 80
>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
protein.
Length = 1238
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSNF AI FV+ ++ S LR
Sbjct: 54 IGPNGSGKSNFMDAISFVMGEKTSSLR 80
>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
protein.
Length = 1238
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSNF AI FV+ ++ S LR
Sbjct: 54 IGPNGSGKSNFMDAISFVMGEKTSSLR 80
>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
protein.
Length = 1238
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSNF AI FV+ ++ S LR
Sbjct: 54 IGPNGSGKSNFMDAISFVMGEKTSSLR 80
>AE014298-2655|AAF48792.1| 4081|Drosophila melanogaster CG7092-PA
protein.
Length = 4081
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSH 263
VG G GKS HA++F LS F +
Sbjct: 1691 VGPTGGGKSVVLHALEFALSHLFEN 1715
>AF186472-1|AAF01416.1| 1409|Drosophila melanogaster condensin
subunit SMC4 protein.
Length = 1409
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN ++ FV + +R
Sbjct: 117 IGPNGSGKSNVIDSMMFVFGCRANRIR 143
>AF185287-1|AAF13306.1| 1409|Drosophila melanogaster XCAP-C/SMC4
homolog Gluon protein.
Length = 1409
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN ++ FV + +R
Sbjct: 117 IGPNGSGKSNVIDSMMFVFGCRANRIR 143
>AF160943-1|AAD46883.2| 1012|Drosophila melanogaster LD20207p
protein.
Length = 1012
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN ++ FV + +R
Sbjct: 117 IGPNGSGKSNVIDSMMFVFGCRANRIR 143
>AE014134-2761|AAF53560.1| 1409|Drosophila melanogaster CG11397-PA
protein.
Length = 1409
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN ++ FV + +R
Sbjct: 117 IGPNGSGKSNVIDSMMFVFGCRANRIR 143
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,479,082
Number of Sequences: 53049
Number of extensions: 317415
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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