Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O12
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 59 9e-10
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 35 0.023
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 27 3.4
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 27 3.4
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 27 3.4
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z70752-2|CAA94757.2| 366|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 27 6.0
U88167-4|AAB42228.3| 452|Caenorhabditis elegans Tetraspanin fam... 27 6.0
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 27 6.0
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 26 7.9
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 59.3 bits (137), Expect = 9e-10
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPDSAAG 287
VGRNGSGKSNFFHAIQFVLSDE++HL+ + G
Sbjct: 31 VGRNGSGKSNFFHAIQFVLSDEYAHLKEEQRLG 63
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +1
Query: 277 QRLALLHEGTGPRVISAFVEIISDNSDNRI 366
QRL LLHE TGP+V A VEI DNS+ R+
Sbjct: 60 QRLGLLHESTGPKVAHARVEITFDNSEKRL 89
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
of males (increasedx chromosome loss) protein 1, isoform
a protein.
Length = 1281
Score = 34.7 bits (76), Expect = 0.023
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL ++ S LR
Sbjct: 43 IGPNGSGKSNLMDAISFVLGEKPSSLR 69
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
protein F35G12.8 protein.
Length = 1549
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN ++ FV S +R
Sbjct: 120 IGPNGSGKSNLIDSLLFVFGFRASKIR 146
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 40 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 70
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 176 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 206
>AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform j protein.
Length = 255
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 217 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 247
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 225 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 255
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 225 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 255
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 225 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 255
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 217 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 247
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 229 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 259
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 8 CXLTFRNGGECLVIIKLCFREFFLDLNEDNC 100
C F G+C + + C EF ++L E++C
Sbjct: 229 CDAGFSTDGDCKIGQEACMDEFDVNLTEEDC 259
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 184 YIMSFIKRLYNNLLSVTLECLGLLPV 107
+I +F+ +Y NL+SVT E + ++P+
Sbjct: 107 FISNFLSDMYINLVSVTGEVMKIIPI 132
>Z70752-2|CAA94757.2| 366|Caenorhabditis elegans Hypothetical
protein F25B3.5 protein.
Length = 366
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 214 VTFSTPFNLYSAM-NSPISDLTQRLALLHEGTGPRVISAFVEIISDNSDNRIP 369
VT + LY + +SP +L R ++L+ G + I F+ + DN+ N P
Sbjct: 187 VTRTVAAMLYMQLIDSPNENLESRRSILYREEGSKWIEIFLPGVDDNNPNVSP 239
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN A+ FV + +R
Sbjct: 121 LGPNGSGKSNVIDALLFVFGFKAGKIR 147
>U88167-4|AAB42228.3| 452|Caenorhabditis elegans Tetraspanin family
protein 19 protein.
Length = 452
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 46 HNKTLFSGVFSXFKRRQLHIKQVIIQGIQELPRAN 150
H KTLFSG S + Q +K ++G + +++
Sbjct: 180 HKKTLFSGTMSEMRTYQARMKCCGVEGADDYSKSH 214
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN A+ FV + +R
Sbjct: 121 LGPNGSGKSNVIDALLFVFGFKAGKIR 147
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 262 ISDLTQRLALLHEGTGPRVISAFVEIISDNSDN 360
+SDL L L G+ PR+ A + + DN +N
Sbjct: 164 LSDLNLFLRHLINGSNPRLAEAHIALAEDNLEN 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,507,883
Number of Sequences: 27780
Number of extensions: 165482
Number of successful extensions: 444
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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