Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O12
(383 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 55 2e-08
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 32 0.15
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 28 1.9
At2g41950.1 68415.m05190 expressed protein 27 4.3
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 27 5.7
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 5.7
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 27 5.7
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 27 5.7
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 27 5.7
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 26 7.5
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam... 26 7.5
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 26 7.5
At4g01160.1 68417.m00154 BTB/POZ domain-containing protein conta... 26 9.9
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 54.8 bits (126), Expect = 2e-08
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Frame = +1
Query: 235 NLYSAMNSPISDLTQRL------ALLHEGTGPRVISAFVEIISDNSDNRIPIEXD 381
N + A+ +SD+ Q L ALLHEG G +V+SAFVEI+ DNSDNR P++ +
Sbjct: 40 NFFHAIRFVLSDIYQNLRSEDRHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKE 94
Score = 48.4 bits (110), Expect = 2e-06
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLRPD 275
VG NGSGKSNFFHAI+FVLSD + +LR +
Sbjct: 31 VGANGSGKSNFFHAIRFVLSDIYQNLRSE 59
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 122 KAFKSYREQIVVEPFDKRHNVVSG 193
+ FKSY+EQ+ E F + N V G
Sbjct: 9 EGFKSYKEQVATEEFSNKVNCVVG 32
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
+G NGSGKSN AI FVL LR
Sbjct: 38 IGPNGSGKSNLMDAISFVLGVRTGQLR 64
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEFSHLR 269
VG NGSGKSN A+ FV +R
Sbjct: 54 VGPNGSGKSNVIDAMLFVFGKRAKQMR 80
>At2g41950.1 68415.m05190 expressed protein
Length = 266
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 132 LNALDYYLFYVQLSSFKSRKNSRKQSFIMTRHSPP 28
LN L +LF Q SF SR ++F ++ SPP
Sbjct: 33 LNRLQSHLFSPQHLSFSQSNVSRYRAFCVSSSSPP 67
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 192 GRNGSGKSNFFHAIQFVL 245
G NGSGKSN +I FVL
Sbjct: 32 GLNGSGKSNILDSICFVL 49
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 192 GRNGSGKSNFFHAIQFVL 245
G NGSGKSN +I FVL
Sbjct: 32 GLNGSGKSNILDSICFVL 49
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 26.6 bits (56), Expect = 5.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 147 KLL*SLLINDIM*SVGRNGSGKSNFFHAIQFVL-SDEFSHL 266
+L L N I +VGR GS ++FVL SD+ SHL
Sbjct: 362 RLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHL 402
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEF 257
VGR G GK+ I VLSDEF
Sbjct: 170 VGRPGVGKTTVLREIARVLSDEF 192
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 189 VGRNGSGKSNFFHAIQFVLSDEF 257
VGR G GK+ I VLSDEF
Sbjct: 170 VGRPGVGKTTVLREIARVLSDEF 192
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 278 SGWPYCTREQALESFRLLLKLYLTTQTIGYLL 373
+GW YCT EQ LE L YL + I L+
Sbjct: 96 NGWGYCTEEQ-LEDILLKHLEYLYNEAISKLV 126
>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 756
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 132 LNALDYYLFYVQLSSFKSRKNSRKQS 55
L ++++Y+ Y FK RKN+ K S
Sbjct: 539 LRSIEFYICYYGWGDFKQRKNTCKDS 564
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 283 LALLHEGTGPRVISAFVEIISDN 351
L LL T PR+++A +++ISDN
Sbjct: 274 LFLLANETTPRILAATIKLISDN 296
>At4g01160.1 68417.m00154 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 505
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 217 LLLPEPLRP-TDYIMSFIKRLYNNLLSVTLECLGLLPVL 104
LL+ + ++P T+ FI Y N+ +T+E L LP++
Sbjct: 205 LLMADSVKPLTNAARQFIASRYKNMSKITMEELMALPLV 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,909,590
Number of Sequences: 28952
Number of extensions: 151707
Number of successful extensions: 341
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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