Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O08
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   4.4  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 2   PGLSLLFDSCQKQRCTTSAMG 64
           P L+L+F+ C+   CT    G
Sbjct: 87  PLLALIFEKCELATCTPREPG 107


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +2

Query: 266 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 385
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 167 LHIFFYLYQNQVLXLYSI 114
           LH+FF+   N++L  Y +
Sbjct: 118 LHVFFFTLFNKLLGQYPV 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,263
Number of Sequences: 336
Number of extensions: 1779
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)