Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O08
(476 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 156 8e-39
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 155 2e-38
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 155 2e-38
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 153 4e-38
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 153 8e-38
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 32 0.17
At2g19710.1 68415.m02303 expressed protein contains Pfam profi... 31 0.53
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 2.2
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 2.2
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.8
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.8
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi... 27 5.0
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 27 8.7
At4g14180.1 68417.m02189 expressed protein ; expression supporte... 27 8.7
At1g15030.1 68414.m01796 expressed protein 27 8.7
At1g10650.1 68414.m01207 expressed protein 27 8.7
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 156 bits (378), Expect = 8e-39
Identities = 72/122 (59%), Positives = 99/122 (81%)
Frame = +2
Query: 59 MGRVRTKTVKXAAKLIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 238
MGRVRTKTVK +++ +IEKYY+ +TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 239 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 418
++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ +G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120
Query: 419 QP 424
+P
Sbjct: 121 EP 122
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 155 bits (375), Expect = 2e-38
Identities = 72/122 (59%), Positives = 98/122 (80%)
Frame = +2
Query: 59 MGRVRTKTVKXAAKLIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 238
MGRVRTKTVK +++ +IEKYY+ +TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 239 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 418
++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 419 QP 424
+P
Sbjct: 121 EP 122
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 155 bits (375), Expect = 2e-38
Identities = 72/122 (59%), Positives = 98/122 (80%)
Frame = +2
Query: 59 MGRVRTKTVKXAAKLIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 238
MGRVRTKTVK +++ +IEKYY+ +TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 239 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 418
++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120
Query: 419 QP 424
+P
Sbjct: 121 EP 122
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 153 bits (372), Expect = 4e-38
Identities = 72/122 (59%), Positives = 97/122 (79%)
Frame = +2
Query: 59 MGRVRTKTVKXAAKLIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 238
MGRVRTKTVK +++ +IEKYY+ +TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 239 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 418
++ VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T +ML L ++ G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120
Query: 419 QP 424
P
Sbjct: 121 DP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 153 bits (370), Expect = 8e-38
Identities = 71/117 (60%), Positives = 97/117 (82%)
Frame = +2
Query: 59 MGRVRTKTVKXAAKLIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 238
MGRVRTKTVK +++ +IEKYY+ +TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 239 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 409
++ VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T +ML L ++I G+
Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 32.3 bits (70), Expect = 0.17
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 221 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 376
T L+ H + + I LQ+ +E RR YVP+ S + HD +E D +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At2g19710.1 68415.m02303 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 937
Score = 30.7 bits (66), Expect = 0.53
Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Frame = +2
Query: 23 DSCQKQRCTTSAMGRVRTKTVKXAAKLIIEK---YYTXLTLDFDTNKRICEEIAIIPTKP 193
D ++++ T + R++ ++ K + + ++K + ++ + + + E A I KP
Sbjct: 784 DDSEEEKLPTRSSSRIQERSHKPSTGIRVQKRTNFKMPVSASSEDEEEVEREAARINAKP 843
Query: 194 LRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEH---DIIEVDPDT 364
+ GF+ + + ++ + + ++ ++E D P H + DPDT
Sbjct: 844 NKTTGYGFSLRTKGQSKANEKHSLPVTTKKTDKESHDQPSPRTVTSSHVPQTVKSPDPDT 903
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 423 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 316
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 423 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 316
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 128 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 301
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 128 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 301
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 612
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 269 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 361
+K EEE R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 450 CHHSHXWVAGCVSCRPLILLKSSIFNISLVSGSTSM 343
C H+ W G S RP+ K+SI+ L+ S S+
Sbjct: 196 CGHTFCWTCGLESHRPVSCKKASIWWTYLLDQSRSI 231
>At4g14180.1 68417.m02189 expressed protein ; expression supported
by MPSS
Length = 1268
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 71 RTKTVKXAAKLIIEKYYTX-LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRH 247
+ + + K ++E+YY+ + L D IC + P + A T L LRH
Sbjct: 411 QVQEIALVLKKMLERYYSQEMGLFPDAFAIICSVFVSLMKTPSFGETADVLTSLQESLRH 470
Query: 248 SQVRGISI 271
S + +S+
Sbjct: 471 SILASLSL 478
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 180 FLPSLLGIKLL-DLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCL 326
++PSL GI++ D+ + + R+ EES S+FR S G ++ S++ L
Sbjct: 119 YVPSLSGIQVYADVDALTSSLQARRQGEESESDFRDSSSEGSSSESERGL 168
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 26.6 bits (56), Expect = 8.7
Identities = 23/100 (23%), Positives = 38/100 (38%)
Frame = +2
Query: 5 GLSLLFDSCQKQRCTTSAMGRVRTKTVKXAAKLIIEKYYTXLTLDFDTNKRICEEIAIIP 184
GL L +D + TSA G + AA I + L +D K ++ I
Sbjct: 107 GLRLSYDDDEHNSSVTSASGSI------LAASPIFQSLDDSLRIDLHRQKDEFDQFIKIQ 160
Query: 185 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRD 304
+ + + + +G+S KLQE++ E D
Sbjct: 161 AAQMAKGVRDMKQRHIASFLTTLEKGVSKKLQEKDHEIND 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,483
Number of Sequences: 28952
Number of extensions: 157574
Number of successful extensions: 492
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -