Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O06
(502 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 109 3e-23
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 100 4e-20
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 97 3e-19
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 95 8e-19
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 89 4e-17
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 86 5e-16
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 83 3e-15
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 79 7e-14
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 77 2e-13
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 76 4e-13
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 75 9e-13
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 63 3e-09
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 63 4e-09
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 62 5e-09
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 60 2e-08
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 56 6e-07
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 2e-06
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 40 0.031
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 39 0.055
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.073
UniRef50_Q4WCW8 Cluster: C2H2 finger domain protein, putative; n... 34 1.6
UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497 ... 34 2.1
UniRef50_Q47VA1 Cluster: Voltage-gated chloride channel; n=1; Co... 32 6.3
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 109 bits (263), Expect = 3e-23
Identities = 48/85 (56%), Positives = 58/85 (68%)
Frame = +3
Query: 72 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 251
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 252 YHTKVRAGRGFTLREIRAAGLNPXI 326
YHTKVRAGRGF+L E+R AG++ +
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKV 90
Score = 60.9 bits (141), Expect = 2e-08
Identities = 31/47 (65%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
RRNKS ESLQ NVQR+KEYR++LILFP K KG+++ EE KLAT
Sbjct: 102 RRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLAT 148
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 99.5 bits (237), Expect = 4e-20
Identities = 45/86 (52%), Positives = 57/86 (66%)
Frame = +3
Query: 60 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 239
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 240 PTVRYHTKVRAGRGFTLREIRAAGLN 317
P+ RY +KVRAGRGFT +E++ AG++
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMS 85
Score = 40.3 bits (90), Expect = 0.024
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFPKGK-KVLK 463
RRN+ ES+ N+QR+ EY++RLI P K KVLK
Sbjct: 100 RRNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLK 134
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 96.7 bits (230), Expect = 3e-19
Identities = 43/83 (51%), Positives = 55/83 (66%)
Frame = +3
Query: 66 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 246 VRYHTKVRAGRGFTLREIRAAGL 314
+RY+TK+R+GRGFT+ E++AAGL
Sbjct: 63 LRYNTKIRSGRGFTIEEVKAAGL 85
Score = 44.8 bits (101), Expect = 0.001
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFPK 445
RRNKS ESL++NV+RIK Y+ARL++ PK
Sbjct: 101 RRNKSEESLKLNVERIKAYQARLVVIPK 128
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 95.1 bits (226), Expect = 8e-19
Identities = 42/89 (47%), Positives = 56/89 (62%)
Frame = +3
Query: 66 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 246 VRYHTKVRAGRGFTLREIRAAGLNPXICP 332
++Y+ KVRAG+GFTL E++ AG+ + P
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAP 90
Score = 48.4 bits (110), Expect = 9e-05
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
R+N+S+E LQ NVQR+K Y+A+L++FP + ++V G++ EE AT
Sbjct: 100 RKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANAT 146
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 89.4 bits (212), Expect = 4e-17
Identities = 45/97 (46%), Positives = 55/97 (56%)
Frame = +3
Query: 36 PW*NSDVKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXX 215
PW ++M NN IPN H K W VKT+F+ PAR RR+ R
Sbjct: 16 PW--PFLEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEG 73
Query: 216 XLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPXI 326
LRPIVRCPTVRY+ K R GRGFT +E+ AAG +P +
Sbjct: 74 PLRPIVRCPTVRYNMKTRLGRGFTPKELVAAGFDPAL 110
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 85.8 bits (203), Expect = 5e-16
Identities = 39/82 (47%), Positives = 52/82 (63%)
Frame = +3
Query: 72 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 251
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 252 YHTKVRAGRGFTLREIRAAGLN 317
Y+ K R GRGFTL E+ A G+N
Sbjct: 63 YNMKTRLGRGFTLEELSACGIN 84
Score = 34.7 bits (76), Expect = 1.2
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEA 472
R + S E+ QINV R+K+Y ++L P KGKK KG A
Sbjct: 99 RTDLSEETFQINVDRLKKYINGIVLQPRKGKKTKKGFA 136
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 83.4 bits (197), Expect = 3e-15
Identities = 36/73 (49%), Positives = 50/73 (68%)
Frame = +3
Query: 96 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 275
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 276 RGFTLREIRAAGL 314
RGFTL E++ AG+
Sbjct: 90 RGFTLAELKEAGI 102
Score = 38.7 bits (86), Expect = 0.073
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFPK 445
R N S ESL NV R+K+Y+ARLILFP+
Sbjct: 118 RVNYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 78.6 bits (185), Expect = 7e-14
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +3
Query: 66 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 246 VRYHTKVRAGRGFTLREIRAAGLN 317
++Y++ + GRGF+L E++ AGLN
Sbjct: 61 IKYNSVQKLGRGFSLIELKEAGLN 84
Score = 33.9 bits (74), Expect = 2.1
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFPK--GKK---VLKGEANE 478
RRN + E L NV+R+K Y ++L+L+P+ GK V+K NE
Sbjct: 99 RRNLNQEELNNNVKRLKAYLSKLVLYPRVAGKPKNGVVKDSTNE 142
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 77.0 bits (181), Expect = 2e-13
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Frame = +3
Query: 60 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 221
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 222 RPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNP 320
RP V CPTVRY+ K R GRGF+L E++AAG+ P
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKP 103
Score = 54.4 bits (125), Expect = 1e-06
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
R+NKS E + INVQR+K Y ++L+LFP KK KG+A EEE K AT
Sbjct: 117 RKNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDATEEEVKAAT 163
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 76.2 bits (179), Expect = 4e-13
Identities = 35/78 (44%), Positives = 48/78 (61%)
Frame = +3
Query: 87 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 266
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 267 RAGRGFTLREIRAAGLNP 320
RAGRGFTL E++A G+ P
Sbjct: 70 RAGRGFTLAELKAVGIAP 87
Score = 36.3 bits (80), Expect = 0.39
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 499
R+NKS E+ NV R++EY+++L++F K K + + E+ AT
Sbjct: 101 RQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSAT 146
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 74.9 bits (176), Expect = 9e-13
Identities = 36/83 (43%), Positives = 48/83 (57%)
Frame = +3
Query: 72 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 251
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 252 YHTKVRAGRGFTLREIRAAGLNP 320
Y+ K R G+GFTL EI+A L P
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTP 86
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 63.3 bits (147), Expect = 3e-09
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = +3
Query: 96 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 275
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 276 RGFTLREIRAAGLN 317
RGF+L+E+RAA ++
Sbjct: 71 RGFSLKELRAAKID 84
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 62.9 bits (146), Expect = 4e-09
Identities = 35/89 (39%), Positives = 48/89 (53%)
Frame = +3
Query: 60 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 239
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 240 PTVRYHTKVRAGRGFTLREIRAAGLNPXI 326
P+ RY+ K+R GRGFTL+E++ AGL +
Sbjct: 60 PSRRYNYKLRFGRGFTLQELKVAGLGKKV 88
Score = 42.7 bits (96), Expect = 0.004
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA 472
R NK ESL +NV R+K Y ++L+LFP+ K KG A
Sbjct: 100 RTNKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKGFA 136
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 62.5 bits (145), Expect = 5e-09
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 219 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLN 317
+RPIVRCPTVRYHTKVR GRGF+L EIR AG++
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIH 45
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 60.5 bits (140), Expect = 2e-08
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 266
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 267 RAGRGFTLREIR 302
+ GRGF+++EI+
Sbjct: 70 KLGRGFSIQEIK 81
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 4e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 81 IPNGHFHKDWQRFVKTWFNQPARRYRRK 164
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 55.6 bits (128), Expect = 6e-07
Identities = 30/84 (35%), Positives = 40/84 (47%)
Frame = +3
Query: 66 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 246 VRYHTKVRAGRGFTLREIRAAGLN 317
++Y+ R GRGFT E AGL+
Sbjct: 60 IKYNRNERLGRGFTAAECEKAGLD 83
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 2e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 72 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 161
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.9 bits (89), Expect = 0.031
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 219 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGL 314
LRP+V T++Y+ KV +GFTL E++AAG+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 39.1 bits (87), Expect = 0.055
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -1
Query: 295 SRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 197
S V P P R L YR VG TIGR+ PA GRG
Sbjct: 411 SSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.073
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 225 PIVRCPTVRYHTKVRAGRGFTLREIR 302
PIV+C T++Y+ K RAGRGF L E++
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELK 72
>UniRef50_Q4WCW8 Cluster: C2H2 finger domain protein, putative; n=7;
Trichocomaceae|Rep: C2H2 finger domain protein, putative
- Aspergillus fumigatus (Sartorya fumigata)
Length = 336
Score = 34.3 bits (75), Expect = 1.6
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 353 STAIPIVRANXWVQSCGPNFTK-SESSTGAYFSMVPNSWASHYRT*RP 213
S +P R+ S ++ + SE STG+YFS VP S+ RT +P
Sbjct: 12 SDTVPTFRSRSIQNSSASHYKRLSEQSTGSYFSAVPTHTTSYSRTPQP 59
>UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497
protein; n=3; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC495497 protein -
Strongylocentrotus purpuratus
Length = 802
Score = 33.9 bits (74), Expect = 2.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -3
Query: 311 SCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPS-CRTWSYGLSFLYSILLSAVSSSWLV 135
SC P+ T S ST + P +H+ T P C WS+ SF Y A L
Sbjct: 367 SCPPSSTSS--STSSKQETPPCPVDNHFETGPPEKCHKWSFIFSFTYLAFFRAAGYFGLE 424
Query: 134 KP-SFNKSLPILVEMSI 87
KP SF+ + +L+ + +
Sbjct: 425 KPTSFSNVVQLLLTLKL 441
>UniRef50_Q47VA1 Cluster: Voltage-gated chloride channel; n=1;
Colwellia psychrerythraea 34H|Rep: Voltage-gated
chloride channel - Colwellia psychrerythraea (strain 34H
/ ATCC BAA-681) (Vibriopsychroerythus)
Length = 574
Score = 32.3 bits (70), Expect = 6.3
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = -3
Query: 176 YSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIP 69
+S++L A+ ++ +FNK L ++++ S++YHI+P
Sbjct: 233 FSLILLAIVLG-ILAAAFNKYLVVIIKKSVKYHIVP 267
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,114,735
Number of Sequences: 1657284
Number of extensions: 9031212
Number of successful extensions: 22143
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22125
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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