Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O06
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   100   1e-22
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   0.69 
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    26   3.7  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   4.8  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   6.4  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   8.4  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   8.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  100 bits (240), Expect = 1e-22
 Identities = 44/79 (55%), Positives = 56/79 (70%)
 Frame = +3

Query: 81  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 260
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 261 KVRAGRGFTLREIRAAGLN 317
           KVRAGRGFTL E++AAG++
Sbjct: 68  KVRAGRGFTLEELKAAGVS 86



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/40 (57%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 478
           RRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATD 140


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 293  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 174
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 309 GLNPXICPNDWNCCRSPLDATSLLNHCKSMFKE 407
           GL P +  N WN     +D + +LN+ K++ +E
Sbjct: 30  GLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 335 VRANXWVQSCGPNFTKSESSTGAYFSMVPN 246
           V++N  V S GP+  K+      YF+++P+
Sbjct: 195 VKSNFSVISSGPDVQKASDLCAKYFAVIPD 224


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 85  LMDISTRIGKDLLKLGLTSQLDDTAES 165
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 310 PAALISRRVNPLPARTLVW 254
           P ALI+ +++ LP R+L+W
Sbjct: 241 PRALITVKLSQLPLRSLLW 259


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 31  LCRGKTPTSKW--ARGII*YLMDISTRIGKDLL--KLGLTSQLDDTAESKIE 174
           +CRGK P   W     +I  L  +   + +D+L   L   S L D A  KI+
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQ 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,367
Number of Sequences: 5004
Number of extensions: 38149
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)