Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O06
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 105 3e-23
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 104 3e-23
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 30 1.2
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 3.7
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 28 4.8
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 4.8
02_04_0147 + 20194244-20195717,20195953-20195969 27 6.4
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 105 bits (251), Expect = 3e-23
Identities = 48/91 (52%), Positives = 59/91 (64%)
Frame = +3
Query: 60 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 239
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 240 PTVRYHTKVRAGRGFTLREIRAAGLNPXICP 332
T++Y+ K RAGRGFTL E++AAG+ P
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAP 91
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
R+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE AT
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATAT 147
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 104 bits (250), Expect = 3e-23
Identities = 48/91 (52%), Positives = 59/91 (64%)
Frame = +3
Query: 60 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 239
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 240 PTVRYHTKVRAGRGFTLREIRAAGLNPXICP 332
T++Y+ K RAGRGFTL E++AAG+ P
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAP 91
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
R+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ EE AT
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATAT 147
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 399 TLICNDSTDLLRLAGIYSN-SNRSGKXL 319
TLI N +T+L RL GIY N N SG L
Sbjct: 167 TLIANKNTELQRLVGIYKNILNNSGVTL 194
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 136 TSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 306
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 215 PSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 39
PS W++ + + LLS S++ + +S PI++ +++++ +P+ HF VLP
Sbjct: 35 PSLPVWTFRMWTIG--LLSCAMLSYINQFFSYRSEPIVITQITVQVAALPIGHFLARVLP 92
Query: 38 RQR 30
+++
Sbjct: 93 KRK 95
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 377 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEER 487
++SL+ VQR+ E R R +L P G ++E R
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERR 218
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 230 YRT*RPSCRTWSYGLSF 180
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,319
Number of Sequences: 37544
Number of extensions: 245853
Number of successful extensions: 539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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