Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O06
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             119   2e-27
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   32   0.31 
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)                 27   8.7  
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              27   8.7  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                27   8.7  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  119 bits (286), Expect = 2e-27
 Identities = 52/89 (58%), Positives = 63/89 (70%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 246 VRYHTKVRAGRGFTLREIRAAGLNPXICP 332
            +Y+TKVRAGRGFTL E++AAG+   + P
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAP 92



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 21/38 (55%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEA 472
           R+N+S ESLQ NVQR+KEY+++LI+FP K  K  +G++
Sbjct: 102 RKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDS 139


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 398 VQRIKEYRARLILFPKGKKVLKGEANEEERKLA 496
           + RI+E R   ++F  GK V  G  +EE+ KLA
Sbjct: 319 IMRIREPRTTALIFSSGKMVCTGAKSEEQSKLA 351


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 341  PIVRANXWVQSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RP 213
            PI     + + C P +T++  + GAY   VP S  +H  T  P
Sbjct: 1164 PIQYVGQFCERCAPGYTRATPNGGAYTPCVPCSCNNHTDTCDP 1206


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 191 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHFDVGVLPRQRK 27
           G  F  +IL+ A  SS L++P F+ SLP+  +      +  L H      P +RK
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH-SCSAFPLERK 248


>SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 315 NPXICPNDWNCCRSPLDATSLLNHCKSMFKE*RNTERVLYCSRKAKRC*RVRPMK 479
           N  +  N+W+    PL+     N   S  K+  +T  VL  +R+ K+   + P+K
Sbjct: 586 NVSLASNEWSDRNEPLNDLQTYNSTSSSSKQNGSTSPVLSTARRVKK--ELTPLK 638


>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
          Length = 771

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 258 TKVRAGRGFTLREIRAAGLNPXICPNDWNCCRSPLDATSLLNHCKSM 398
           +++RAG      E  +A L P        CC   L A    NHC S+
Sbjct: 304 SEIRAGDTLIAEEPYSAVLLPENAKTHCECCYKSLVAPVPCNHCSSV 350


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 252 YHTKVRA--GRGFTLREIRAAG 311
           YHTK  A  GRG TL  IRA G
Sbjct: 519 YHTKKSAHQGRGITLSSIRAGG 540


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 212 SCRTWSYGLSFLYSILLSAVSSSWLV 135
           SCRTW    SF+   +L AV S+ L+
Sbjct: 199 SCRTWICSTSFMSPSILVAVGSAVLI 224


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 212 SCRTWSYGLSFLYSILLSAVSSSWLV 135
           SCRTW    SF+   +L AV S+ L+
Sbjct: 137 SCRTWICSTSFMSPSILVAVGSAVLI 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,762
Number of Sequences: 59808
Number of extensions: 281173
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)