Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O06
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    97   5e-21
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    94   4e-20
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL117204-14|CAB55155.1|  264|Caenorhabditis elegans Hypothetical...    27   7.6  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 41/84 (48%), Positives = 56/84 (66%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 246 VRYHTKVRAGRGFTLREIRAAGLN 317
            RY+TK R GRGF+L+E++AAG++
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGIS 87



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLA 496
           R NK+ E L+ N  R+KEY+A+LILFP K     KG+++ EE K+A
Sbjct: 102 RTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVA 147


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 246 VRYHTKVRAGRGFTLREIRAAGLN 317
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -1

Query: 202 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 113
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>AL117204-14|CAB55155.1|  264|Caenorhabditis elegans Hypothetical
           protein Y116A8C.23 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 404 FEH*FAMIQQTCCV*RGSTAIPIVRANXWVQSCGPNFTKSESSTGAYFSMV 252
           FE+  + I+  C +    TA+ I     W+  CG + T S     A  S +
Sbjct: 25  FENCLSGIEFWCLMITSETALSIYVLIHWLLGCGSHITFSSDDNAAVLSFI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,803
Number of Sequences: 27780
Number of extensions: 209975
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)