Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O06
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    99   2e-21
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    99   2e-21
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            95   2e-20
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    90   7e-19
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   1.3  
At5g64410.1 68418.m08091 oligopeptide transporter OPT family pro...    27   5.4  
At5g12280.1 68418.m01444 hypothetical protein                          27   5.4  
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    27   9.4  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 44/89 (49%), Positives = 57/89 (64%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 246 VRYHTKVRAGRGFTLREIRAAGLNPXICP 332
           ++Y+ KVR G+GFTL E++AAG+   + P
Sbjct: 62  LKYNMKVRTGKGFTLEELKAAGIPKKLAP 90



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
           R+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  EE   AT
Sbjct: 100 RKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANAT 146


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 44/89 (49%), Positives = 57/89 (64%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 246 VRYHTKVRAGRGFTLREIRAAGLNPXICP 332
           ++Y+ KVR G+GFTL E++AAG+   + P
Sbjct: 62  LKYNMKVRTGKGFTLEELKAAGIPKKLAP 90



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
           R+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  EE   AT
Sbjct: 100 RKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANAT 146


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 42/89 (47%), Positives = 56/89 (62%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 246 VRYHTKVRAGRGFTLREIRAAGLNPXICP 332
           ++Y+ KVRAG+GFTL E++ AG+   + P
Sbjct: 62  LKYNMKVRAGKGFTLEELKVAGIPKKLAP 90



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLAT 499
           R+N+S+E LQ NVQR+K Y+A+L++FP + ++V  G++  EE   AT
Sbjct: 100 RKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANAT 146


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 41/89 (46%), Positives = 55/89 (61%)
 Frame = +3

Query: 66  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 245
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R               +RP+V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 246 VRYHTKVRAGRGFTLREIRAAGLNPXICP 332
           + Y+ KVRAG+GFTL E++AAG+   + P
Sbjct: 62  LTYNMKVRAGKGFTLEELKAAGIPKKLAP 90



 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
 Frame = +2

Query: 362 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLK-GEANEEERKLAT 499
           R+N+S+E  Q NVQR+K Y+A+L++FP+  + +K G++ ++E   AT
Sbjct: 100 RKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANAT 146


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 196 ATALAFFILFCFLRYRRAGWLNQV 125
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At5g64410.1 68418.m08091 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 729

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -3

Query: 215 PSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 39
           P+   W++ + FL   L+S    S+L +    ++ P+++ +++++   +P+ HF   VLP
Sbjct: 28  PTLPVWTFRMWFLG--LISCSLLSFLNQFFSYRTEPLVITQITVQVATLPIGHFLAKVLP 85

Query: 38  RQR 30
           + R
Sbjct: 86  KTR 88


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 374 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 472
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -1

Query: 487 TFFFIGLTLQHLFAFREQYKTRSVFLYSLNIDLQ*FNRLVASSGDLXXXXXXXXXXXFNP 308
           TFF  GLT  HL+       T   F YS +      N+ V  +               N 
Sbjct: 246 TFFVGGLTCFHLYLISTNQTTYENFRYSYDRHSNPHNKGVVDNFK-EIFFSPIPPSKNNF 304

Query: 307 AALISRRVNPLPARTLV 257
            A++ R  NP+P+R++V
Sbjct: 305 RAMVPRE-NPMPSRSVV 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,007
Number of Sequences: 28952
Number of extensions: 198094
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)