Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O05
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 195 4e-51
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.11
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.19
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.1
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.1
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 4.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 9.5
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.5
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 195 bits (476), Expect = 4e-51
Identities = 95/168 (56%), Positives = 126/168 (75%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 SQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRE 310
+Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP P LKAF K Q RL RE
Sbjct: 23 AQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRE 82
Query: 311 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 490
LEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GK
Sbjct: 83 LEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGK 140
Query: 491 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 634
R R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 141 RTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 422 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 598
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 599 KLTGREVTFEFP 634
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 335 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 514
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 515 SQLIKVHLD-KNQQTTIEHKV 574
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 378 LGLGRILRSPTKTTCLPLNFFSSSRTS 298
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 92 DDLRTHVSRPLLNRFNTIFSNFT 24
+D+ H+S P+L RF T+F +FT
Sbjct: 2792 EDVGKHIS-PILERFKTLFISFT 2813
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 351 ETVRSCLSPATKPVLLTNKRGHAQ 422
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 248 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 340
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 406 KEATLKDIDLCVRCYPRGLGLPC 474
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 5.5
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 8/172 (4%)
Frame = +2
Query: 146 LVELETN--SDLKAQLRELYIT-KAKEIELHNKKSII--IYVPMPKLKAFQKIQIRLVRE 310
L+E+E+ S L ++ L + K E E++N + I + +L+ + + I +
Sbjct: 875 LIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLEREKSVAITAINH 934
Query: 311 LEKK---FSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEI 481
LEK+ G+ F I S R +Q S+ AI ++ +
Sbjct: 935 LEKENDWIDGQKQHFGKQGTIFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG 994
Query: 482 VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPE 637
V K+ KL S + +H DK + +D F+ + T REV F E
Sbjct: 995 VEKK-EAKLR-SMIKTIHRDKKKIQDTVKSIDRFKRSALEKTWREVNSSFGE 1044
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 368 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 493
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 555 VCWFLSKCTLMSCEPSNLTLMR 490
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,898
Number of Sequences: 5004
Number of extensions: 51023
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -