Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O05
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 228 2e-60
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical p... 28 6.7
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 6.7
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 6.7
AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical ... 27 8.8
AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 228 bits (558), Expect = 2e-60
Identities = 105/169 (62%), Positives = 138/169 (81%), Gaps = 1/169 (0%)
Frame = +2
Query: 137 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELE 316
SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P+LKAF KI LVRELE
Sbjct: 24 SQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALVRELE 83
Query: 317 KKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 493
KKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+DA L++LV+PAE+VG+R
Sbjct: 84 KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143
Query: 494 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 640
IRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 150 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 260
S+SK T F SF Q ++K YT S SSS R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412
>Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 71 KHEYEDHQSERC*GGFLSRPRXS 139
+HEY DH S GG ++ P+ S
Sbjct: 382 QHEYNDHDSSSMSGGMMNSPKIS 404
>Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical
protein M04G12.4b protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 71 KHEYEDHQSERC*GGFLSRPRXS 139
+HEY DH S GG ++ P+ S
Sbjct: 353 QHEYNDHDSSSMSGGMMNSPKIS 375
>Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 71 KHEYEDHQSERC*GGFLSRPRXS 139
+HEY DH S GG ++ P+ S
Sbjct: 382 QHEYNDHDSSSMSGGMMNSPKIS 404
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 500 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 631
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 500 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 631
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
>AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.7 protein.
Length = 239
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +3
Query: 69 RNMSTKIIKASGAEADSFRDLXSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSS 248
+NM TK+ + +DL S++ N + + S PN+G +K + + ++S++
Sbjct: 145 QNMDTKMEEMMQLMRALIQDLTSQKLAQNPESSKCSFPNYGLEIQKKFEDMIQNMKSQTG 204
Query: 249 SM 254
S+
Sbjct: 205 SV 206
>AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.3 protein.
Length = 239
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +3
Query: 69 RNMSTKIIKASGAEADSFRDLXSRRRWSNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSS 248
+NM TK+ + +DL S++ N + + S PN+G +K + + ++S++
Sbjct: 145 QNMDTKMEEMMQLMRALIQDLTSQKLAQNPESSKCSFPNYGLEIQKKFEDMIQNMKSQTG 204
Query: 249 SM 254
S+
Sbjct: 205 SV 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,015
Number of Sequences: 27780
Number of extensions: 287984
Number of successful extensions: 834
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -