Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O05
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 179 1e-45
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 179 1e-45
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 179 1e-45
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 175 2e-44
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 175 2e-44
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.7
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 3.6
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.6
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 6.2
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 8.2
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 8.2
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 179 bits (436), Expect = 1e-45
Identities = 89/168 (52%), Positives = 127/168 (75%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 SQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRE 310
+QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP KAF+KI RLVRE
Sbjct: 24 AQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRE 83
Query: 311 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 490
LEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGK
Sbjct: 84 LEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGK 139
Query: 491 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 634
R R +LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 140 RTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 179 bits (436), Expect = 1e-45
Identities = 87/168 (51%), Positives = 129/168 (76%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 SQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRE 310
+QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+KI +RLVRE
Sbjct: 24 TQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRE 83
Query: 311 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 490
LEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGK
Sbjct: 84 LEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGK 139
Query: 491 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 634
R R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 140 RTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 179 bits (436), Expect = 1e-45
Identities = 87/168 (51%), Positives = 129/168 (76%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 SQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRE 310
+QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+KI +RLVRE
Sbjct: 24 TQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRE 83
Query: 311 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 490
LEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGK
Sbjct: 84 LEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGK 139
Query: 491 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 634
R R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 140 RTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 175 bits (427), Expect = 2e-44
Identities = 86/168 (51%), Positives = 127/168 (75%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 SQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRE 310
+QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +RLVRE
Sbjct: 24 AQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRE 83
Query: 311 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 490
LEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGK
Sbjct: 84 LEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGK 139
Query: 491 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 634
R R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 140 RTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 175 bits (427), Expect = 2e-44
Identities = 86/168 (51%), Positives = 127/168 (75%), Gaps = 2/168 (1%)
Frame = +2
Query: 137 SQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRE 310
+QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +RLVRE
Sbjct: 24 AQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRE 83
Query: 311 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 490
LEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGK
Sbjct: 84 LEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGK 139
Query: 491 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 634
R R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 140 RTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 519 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 418
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 406 KEATLKDIDLCVRCYPRGLG 465
+E++LK CVRCYP G G
Sbjct: 181 RESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 406 KEATLKDIDLCVRCYPRGLG 465
+E++LK CVRCYP G G
Sbjct: 180 RESSLKYQTRCVRCYPNGTG 199
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 221 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 370
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 473 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 592
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 95 SERC*GGFLSRPRXSQALVELETNSDLKA-QLRELYITKAKEIE 223
S+ C G ++ QA E++ LKA +++EL+I K KE+E
Sbjct: 320 SDVCAPGSITLDIIQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,604,145
Number of Sequences: 28952
Number of extensions: 272302
Number of successful extensions: 789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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