Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O04
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   144   1e-35
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   1.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  144 bits (348), Expect = 1e-35
 Identities = 77/146 (52%), Positives = 97/146 (66%)
 Frame = +3

Query: 60  MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
           MGRMH+ GKGI+ SALPY RS P        ++   +     ++   P ++         
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSV-VEQILKFSKKGMSPSQIGVTLRDSHG 59

Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
           +P+      ++   I+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+E
Sbjct: 60  IPQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIE 119

Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
           SRIHRLARYY+    LPP WKYES+T
Sbjct: 120 SRIHRLARYYRKVGALPPTWKYESAT 145



 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
 Frame = +2

Query: 104 AALP-PQCPXPGLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
           +ALP  + P    K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+R
Sbjct: 14  SALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMR 73


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 360 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 461
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 327 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 479
           YYL KKA  + +    N  +K+SK   I +E +  +       +  L  +W
Sbjct: 202 YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSW 252


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 130 TWXEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSC 243
           TW E +  R +GT L++  E   S +N+     F+  C
Sbjct: 60  TWPENEGFRIEGTLLESLVESVTSASNYPKVNAFSLMC 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,677
Number of Sequences: 5004
Number of extensions: 39258
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)