Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O04
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 142 2e-34
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 127 7e-30
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 122 1e-28
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 107 6e-24
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 1.4
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 27 7.3
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 27 7.3
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.7
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 142 bits (344), Expect = 2e-34
Identities = 75/141 (53%), Positives = 92/141 (65%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMH+ GKGIS SA+PY+R+ P + ++ +P ++
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADV-EEMIMKAAKKGQMPSQIGVVLRDQHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+P S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 420 SRIHRLARYYKTKSVLPPNWK 482
SRIHRLARYYK LPP WK
Sbjct: 120 SRIHRLARYYKRTKKLPPTWK 140
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALP-PQCPXPGLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+A+P + P +K A DV+E I K KKG PSQIGV+LRD HG+ V+ VTG KILR
Sbjct: 14 SAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILR 73
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 127 bits (306), Expect = 7e-30
Identities = 67/141 (47%), Positives = 89/141 (63%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMH+ GKG+S S LPYRR+ P + + ++ LP ++
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEV-EEMIVRVAKKGQLPSQIGAILRDAHA 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+P + ++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVE
Sbjct: 60 VPLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVE 119
Query: 420 SRIHRLARYYKTKSVLPPNWK 482
SR+HRL RYY+ +P +K
Sbjct: 120 SRVHRLTRYYRLAKKIPAFFK 140
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ LP + P +K +A +V+E I ++ KKG PSQIG +LRD+H V + VTG KILR
Sbjct: 14 SVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVPLAQGVTGGKILR 73
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 122 bits (295), Expect = 1e-28
Identities = 56/67 (83%), Positives = 61/67 (91%)
Frame = +3
Query: 282 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 461
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK
Sbjct: 113 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 172
Query: 462 VLPPNWK 482
LPP WK
Sbjct: 173 KLPPTWK 179
Score = 55.2 bits (127), Expect = 3e-08
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +2
Query: 158 VKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
V+E I K KKG PSQIGV+LRD HG+ V+ VTG KILR
Sbjct: 72 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILR 112
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 107 bits (257), Expect = 6e-24
Identities = 51/64 (79%), Positives = 55/64 (85%)
Frame = +3
Query: 282 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 461
I+KA GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK
Sbjct: 131 ILKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTK 190
Query: 462 VLPP 473
LPP
Sbjct: 191 KLPP 194
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 155 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKIL 277
+V+E I K K G SQIGV+LR HG+ V+ + KIL
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKIL 129
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 96 GRYPYQERAYDPCLRLFT 43
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 190 LLSKFVNLFLYIVGSQFQXRXGTLRR*GSADWEIPLPGACIRPMF 56
L+ +VN F Y++G R+ +A P PG CI+ MF
Sbjct: 551 LVDGYVNSFNYVIGEDGMILNAISRQLNNA----PAPGVCIQGMF 591
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 122 CPXPGLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 253
CP +LTA DV + K+G+ Q + L DS GV+ +R
Sbjct: 136 CPITSRQLTASDVTDTAVKIGE------QTVLFLPDSEGVSSLR 173
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 309 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 407
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,840
Number of Sequences: 37544
Number of extensions: 275670
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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