Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O04
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        127   7e-30
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   5.7  
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              27   7.5  
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)                 27   7.5  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   9.9  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               27   9.9  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  127 bits (306), Expect = 7e-30
 Identities = 58/67 (86%), Positives = 63/67 (94%)
 Frame = +3

Query: 282 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 461
           I+KA GLAP LPEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK 
Sbjct: 69  ILKAKGLAPSLPEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKR 128

Query: 462 VLPPNWK 482
           VLPPNWK
Sbjct: 129 VLPPNWK 135



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/47 (82%), Positives = 45/47 (95%)
 Frame = +2

Query: 140 KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
           KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILR
Sbjct: 22  KLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILR 68


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -1

Query: 240 TPCESLSITPICEGVRPF-FPSL*ICS--FTSSAVNFXPGXGHCGGKAAP-TGRY-PYQE 76
           TPC  LS+TP    V+P+       C+  +T S   + P    C  +  P T RY P  E
Sbjct: 694 TPCNDLSVTPYPLSVKPYAMNRYNPCTERYTPSTERYTP----CTKRYTPSTERYTPCTE 749

Query: 75  RAYDPCLRLFT 43
           R Y PC   +T
Sbjct: 750 R-YTPCYERYT 759


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 297 PLPS*XRRIFLPVTNLTWATPCESLSITP-ICEGVRPFFP 181
           PLP      FLPV N+ WAT  ++LS  P +   VRP  P
Sbjct: 276 PLPQKLLVEFLPVDNVAWAT-VQNLSQNPRLRTSVRPKRP 314


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 176 KLGKKGLTPSQIGVMLRD 229
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 20  CRCQIGDLVKSRKHGSYARSW*GYLP 97
           CR +IG + KS KHGSY+ S  G+ P
Sbjct: 77  CRSRIG-IQKSTKHGSYSLSIPGHDP 101


>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
          Length = 298

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 162 FTSSAVNFXPGXGHCGGKAAP 100
           FT S+    PG G  GGKA P
Sbjct: 105 FTKSSCTISPGSGFRGGKAVP 125


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 306 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 449
           PD+P+D YYL +  +++M   L     KD   K   +L++     L  Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 288 KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVESRIHRLARYYKTK 458
           +A G+APD P +L  LIK+ + + +     +  R+ K+   +    + R+  + R  +TK
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDVRLTAMERLSQTK 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,997
Number of Sequences: 59808
Number of extensions: 310946
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)