Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O04
(543 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79239-1|CAA55821.1| 151|Homo sapiens ribosomal protein S13 pro... 167 3e-41
L01124-1|AAA60283.1| 151|Homo sapiens ribosomal protein S13 pro... 167 3e-41
D88010-1|BAA13528.1| 151|Homo sapiens ribosomal protein S13 pro... 167 3e-41
BC100032-1|AAI00033.1| 151|Homo sapiens ribosomal protein S13 p... 167 3e-41
BC066322-1|AAH66322.1| 151|Homo sapiens ribosomal protein S13 p... 167 3e-41
BC029732-1|AAH29732.1| 151|Homo sapiens ribosomal protein S13 p... 167 3e-41
BC006772-1|AAH06772.1| 151|Homo sapiens ribosomal protein S13 p... 167 3e-41
BC000475-1|AAH00475.1| 151|Homo sapiens ribosomal protein S13 p... 167 3e-41
L05090-1|AAC15854.1| 116|Homo sapiens ribosomal protein S13 pro... 101 2e-21
AM083042-1|CAL07188.1| 97|Homo sapiens immunoglobulin heavy ch... 30 6.0
>X79239-1|CAA55821.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>L01124-1|AAA60283.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>D88010-1|BAA13528.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>BC100032-1|AAI00033.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>BC066322-1|AAH66322.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>BC029732-1|AAH29732.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>BC006772-1|AAH06772.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>BC000475-1|AAH00475.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 167 bits (405), Expect = 3e-41
Identities = 88/146 (60%), Positives = 105/146 (71%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMHAPGKG+SQSALPYRRSVP + + + L ++ P ++
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+ + + I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+E
Sbjct: 60 VAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYKTK VLPPNWKYESST
Sbjct: 120 SRIHRLARYYKTKRVLPPNWKYESST 145
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 14 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 73
>L05090-1|AAC15854.1| 116|Homo sapiens ribosomal protein S13
protein.
Length = 116
Score = 101 bits (241), Expect = 2e-21
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +3
Query: 93 SQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS*LAKR 272
SQSALPYRRSVP + + + L ++ P ++ + + +
Sbjct: 1 SQSALPYRRSVPTWLKLTSDDV-KEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK 59
Query: 273 SSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 443
I+K+ GLA DLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLAR
Sbjct: 60 ILRILKSKGLASDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLAR 116
Score = 93.9 bits (223), Expect = 3e-19
Identities = 48/60 (80%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KILR
Sbjct: 3 SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILR 62
>AM083042-1|CAL07188.1| 97|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 97
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 199 SLTNWCNAEGFTWSCPSKIRNWQKDPPXS*RQWV 300
SL C A GFT+S S +RNW + P +WV
Sbjct: 20 SLRLSCAASGFTFS--SYVRNWVRQSPGKGLEWV 51
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,749,687
Number of Sequences: 237096
Number of extensions: 1573902
Number of successful extensions: 4657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4657
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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