Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O04
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   146   7e-36
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   8.7  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   8.7  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  146 bits (355), Expect = 7e-36
 Identities = 76/146 (52%), Positives = 101/146 (69%)
 Frame = +3

Query: 60  MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
           MGRMH PGKG+++SA+PYRRSVP         + +++   + ++   P ++         
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEV-QDQIVKMAKKGLRPSQIGVILRDSHG 59

Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
           + +       +   I+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVE
Sbjct: 60  VGQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVE 119

Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
           SRIHRLARYYKTK  LPP WKYES T
Sbjct: 120 SRIHRLARYYKTKRQLPPTWKYESGT 145



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
 Frame = +2

Query: 104 AALPPQCPXPGL-KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
           +A+P +   P   K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV QVR + G KI R
Sbjct: 14  SAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNKIFR 73


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 169 NLQTWKEGSHSLTNWCNAEGFTW 237
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 169 NLQTWKEGSHSLTNWCNAEGFTW 237
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 424 GFTDWPVITKLRVCFLLTG 480
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 424 GFTDWPVITKLRVCFLLTG 480
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,618,008
Number of Sequences: 27780
Number of extensions: 227131
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)