Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O04
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 198  VRPFFPSL*ICSFTSSAVNFXPGXGHCGGKAAPTG 94
            V P  P L + S TSS++      GH GG A+ TG
Sbjct: 1403 VPPSAPVLYVTSSTSSSILLHWKSGHNGG-ASLTG 1436


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 198  VRPFFPSL*ICSFTSSAVNFXPGXGHCGGKAAPTG 94
            V P  P L + S TSS++      GH GG A+ TG
Sbjct: 1399 VPPSAPVLYVTSSTSSSILLHWKSGHNGG-ASLTG 1432


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 122 CPXPGLKLTADDVKEQIY 175
           CP    +L  DD+KE  Y
Sbjct: 338 CPKNNKELKYDDIKEMEY 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,541
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)