Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_O04
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP... 151 2e-37
At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi... 149 9e-37
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot... 31 0.66
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 29 2.0
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 29 2.0
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi... 29 2.7
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 28 4.6
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 28 4.6
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 27 8.1
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 27 8.1
At5g03390.1 68418.m00292 expressed protein contains Pfam profile... 27 8.1
At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing ... 27 8.1
At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing ... 27 8.1
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 27 8.1
>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
Arabidopsis thaliana,AB031739
Length = 151
Score = 151 bits (367), Expect = 2e-37
Identities = 82/146 (56%), Positives = 97/146 (66%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMH+ GKGIS SALPY+RS P P ++ P ++
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKT-TPQDVDESICKFAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+P+ S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYK LPP WKYES+T
Sbjct: 120 SRIHRLARYYKKTKKLPPVWKYESTT 145
Score = 72.9 bits (171), Expect = 1e-13
Identities = 38/60 (63%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LK T DV E I K KKGLTPSQIGV+LRDSHG+ QV+ VTG KILR
Sbjct: 14 SALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILR 73
>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
to ribosomal protein S13; PF00312 (View Sanger Pfam):
ribosomal protein S15; identical to cDNA AtRPS13A mRNA
for cytoplasmic ribosomal protein S13 GI:6521011
Length = 151
Score = 149 bits (362), Expect = 9e-37
Identities = 81/146 (55%), Positives = 97/146 (66%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPYLX*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHME 239
MGRMH+ GKGIS SALPY+RS P + ++ P ++
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDV-DESICKFAKKGLTPSQIGVILRDSHG 59
Query: 240 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 419
+P+ S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 420 SRIHRLARYYKTKSVLPPNWKYESST 497
SRIHRLARYYK LPP WKYES+T
Sbjct: 120 SRIHRLARYYKKTKKLPPVWKYESTT 145
Score = 73.7 bits (173), Expect = 7e-14
Identities = 38/60 (63%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 AALPPQCPXPG-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 280
+ALP + P LK T+ DV E I K KKGLTPSQIGV+LRDSHG+ QV+ VTG KILR
Sbjct: 14 SALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILR 73
>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II (CP-MII)
GB:CAA70815 [Hordeum vulgare]
Length = 459
Score = 30.7 bits (66), Expect = 0.66
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 96 GRYPYQERAYDPCLRLFT 43
GRYP+ RAYDPC ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 139 EIDCRRCKGTNLQT--WKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 279
E+ CR C + T + G CNA G W+ +R+ K PP
Sbjct: 214 EVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPP 262
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 139 EIDCRRCKGTNLQT--WKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 279
E+ CR C + T + G CNA G W+ +R+ K PP
Sbjct: 216 EVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPP 264
>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 723
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 267 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 446
KR+ K M + +P+ Y +A+ K +NRKDK + L ++ S+ R+
Sbjct: 642 KRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINSKFGRVKA- 698
Query: 447 YKTKSVLPPNWKYESS 494
KTK WKY+++
Sbjct: 699 -KTKGKKDEFWKYKTN 713
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +1
Query: 148 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 264
C C TN W+ G CNA G W + N+
Sbjct: 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 142 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 228
+ C C+ T W+EG + CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 163 GTNLQTWKEGSHSLTNWCNAE 225
GTN ++ KE SLT+W AE
Sbjct: 70 GTNNESMKETGQSLTSWVEAE 90
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 262 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 167
+YESY+G M + QHY + S+T L V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339
>At5g03390.1 68418.m00292 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 373
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 190 GSHSLTNWCNAEGFTWSCPSKIRNWQ-KDPPXS 285
G + WCN F W +++ W K+PP S
Sbjct: 250 GDSFIVYWCNERSFYWK-KGEVKPWTGKNPPPS 281
>At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing
protein
Length = 354
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +1
Query: 34 RRFSKKPQTWVVCTLLVRV-SPSRRCLTAAVSXTWXEIDCRRCKGTNLQTWKEGSHSLT- 207
R+ S P + V + RV S R A V ++C RC TN + ++SLT
Sbjct: 39 RQLSSPPTSQVAGSSQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQ 98
Query: 208 --NWCNAEGFTWSCPSKIRN 261
++C W+ +RN
Sbjct: 99 PRHFCKTCRRYWTRGGSLRN 118
>At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing
protein
Length = 323
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +1
Query: 34 RRFSKKPQTWVVCTLLVRV-SPSRRCLTAAVSXTWXEIDCRRCKGTNLQTWKEGSHSLT- 207
R+ S P + V + RV S R A V ++C RC TN + ++SLT
Sbjct: 39 RQLSSPPTSQVAGSSQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQ 98
Query: 208 --NWCNAEGFTWSCPSKIRN 261
++C W+ +RN
Sbjct: 99 PRHFCKTCRRYWTRGGSLRN 118
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 148 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 249
C C G L K+GS ++ CN +G CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,342
Number of Sequences: 28952
Number of extensions: 214671
Number of successful extensions: 559
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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