Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_O01
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.69 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +2

Query: 269 IVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENXSTDEPS--VEDEV 442
           +V E   +    A     G+ +NG+ +           + EP VE  S+  P+  +    
Sbjct: 462 VVEEAACRFSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVETNSSPSPNPRIASAP 521

Query: 443 AVSEENNPSEDGSETNG 493
           + S  ++P   G+   G
Sbjct: 522 SSSTSSSPPAKGAAAAG 538


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 358 CCFLYFTILILSICVTGSFPSA 293
           C F   TI+  ++ + GS PSA
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSA 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,685
Number of Sequences: 438
Number of extensions: 1693
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)