Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N24
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    28   1.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.4  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    26   5.5  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   5.5  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   7.2  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   7.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.2  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 257 VQLSKSLSWLLRHGAVKEGLQIR 325
           V  SK+LS +LRH A   GLQIR
Sbjct: 35  VHYSKALSKVLRHTAKANGLQIR 57


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 152  VKSWIPSVTYFWNLITACSIS 214
            + +W+P   YFW  +TA  IS
Sbjct: 1343 ITAWLPHYIYFWITLTALCIS 1363


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 398 NNKIMTIFHSIVNPQTLLLHVN 463
           NN +++  H  + P  LLLH N
Sbjct: 184 NNNLVSYIHGDIKPDNLLLHEN 205


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 362 FIYWIYYLFILLNNKIMTIFHSIVNPQTLLLHVNHASLKIEH 487
           FI W+ Y  +  N    T   S + PQ ++ H+N   + I H
Sbjct: 429 FISWLNYAIVEFN----TSEPSSIPPQEIIEHINETVIYIRH 466


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +1

Query: 247 QKRRTAKQIFILASEARCCERRTANKVI*LKSNRKVVNIYLLDLLFIYLTE**NYDHISF 426
           ++RR A++    AS A   ++   +K    K ++KVV   L D  +   T+  + +H+  
Sbjct: 321 EERRAAEEAAAKASAAAANKKAKEDKKKAQKRDKKVVKNALKDFNYFSATDVPSAEHVDS 380

Query: 427 HCKSSNIVVT 456
             K  +++++
Sbjct: 381 VLKDVDVIMS 390


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 199 SVFNIA*LFMSLN-LQVQKRRTAKQIFILASEARCCERRTA 318
           S FNI+ +   L+ L  + R+  + ++   SEA C ER+ A
Sbjct: 41  SAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSERKLA 81


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 365 IYWIYYLFILLNNKIMTIFHSIVNPQTLLLHVNHASLKIEH 487
           I W++ LF +LN +I ++ ++    +  LL  NHA+  + H
Sbjct: 418 ILWLW-LFRMLNLRIASMGNNHTLLEKCLLITNHATFLVSH 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,538
Number of Sequences: 5004
Number of extensions: 57311
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)