Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N24
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              30   1.4  
SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)                      29   2.5  
SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)              29   4.4  
SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_43938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    28   7.6  

>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 291 LRSQDKDLLSCTSFLHL*IKTHKQLSDIEHAVIKFQKYVTDGIQLFTKKVFGLIVMYYCK 112
           +RSQ+   + C+S++     T + L      +  F  YV  G  L   KVF +I ++Y  
Sbjct: 27  IRSQEVGAIRCSSYIGSLNATFRALCPAITGIAMFVPYVLTGNTLTPGKVFTVIGLFYSI 86

Query: 111 R 109
           R
Sbjct: 87  R 87


>SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)
          Length = 559

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 82  QNKCPSVFLTFTIIHYYQTKHFFCKKLD 165
           Q+  P  +LT+  ++ + + HFFC +LD
Sbjct: 172 QSYTPVAYLTYLTLNVHMSYHFFCAELD 199


>SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)
          Length = 1002

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/38 (28%), Positives = 26/38 (68%)
 Frame = +2

Query: 374 IYYLFILLNNKIMTIFHSIVNPQTLLLHVNHASLKIEH 487
           IY + + +++ +++I H ++N   +LLH++H  L I++
Sbjct: 50  IYAVPLSIDHVLLSIDHVLLNIDHVLLHIDHMLLNIDN 87



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/46 (23%), Positives = 28/46 (60%)
 Frame = +2

Query: 374 IYYLFILLNNKIMTIFHSIVNPQTLLLHVNHASLKIEH*FNISDHL 511
           I ++F+ +++ +++I H +++   + L ++H  L I+H     DH+
Sbjct: 92  IVHVFLSIDHGLLSIDHMLLSIDHVSLSIDHVLLSIDHVLLNIDHV 137


>SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 434 NPQTLLLHVNHASLKIEH*FNISDHLNKISDSLCNQ 541
           NP  L    +H + K +H +N  DHLN   D L N+
Sbjct: 440 NPDHLYNKPDHLNNKPDHLYNKPDHLNNDPDHLNNK 475


>SB_43938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +2

Query: 401 NKIMTIFHSIVNPQTLLLHVNHASLKIEH*FNISDHLNKISDSLCNQYYI 550
           N I TI H I +    + H+ H +  I H + +++H+  ++++  + Y++
Sbjct: 23  NSINTINH-IYHVTNTINHIYHVTNTINHIYQVTNHIYHVTNTTNHIYHV 71


>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 338 NPIVK*STFIYWIYYLFILLNNKIMTIFHSIVNPQTLLLHV 460
           NP+V  +T +  IY L +  N  +  I+H +V+  T++  +
Sbjct: 544 NPLVSCNTVMRQIYNLLLSCNTVMRQIYHPLVSCNTVMRQI 584


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,841,696
Number of Sequences: 59808
Number of extensions: 368117
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)