Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N24
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY211494-1|AAO62941.1|  253|Homo sapiens tRNA splicing 2' phosph...    36   0.095
AC004908-3|AAD05197.1|  430|Homo sapiens WUGSC:H_DJ0855D21.3 pro...    30   8.3  

>AY211494-1|AAO62941.1|  253|Homo sapiens tRNA splicing 2'
           phosphotransferase 1 protein.
          Length = 253

 Score = 36.3 bits (80), Expect = 0.095
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 251 KDVQLSKSLSWLLRHGAVKEGL 316
           +DVQLSK+LS+ LRHGA+K GL
Sbjct: 27  RDVQLSKALSYALRHGALKLGL 48


>AC004908-3|AAD05197.1|  430|Homo sapiens WUGSC:H_DJ0855D21.3
           protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  SI*QNKCPSVFLTFTIIHYYQTKHFFCKKLDTISYIFLEFN 195
           SI ++    + LT  +I Y +TKHF  KK   I   +L FN
Sbjct: 41  SIGEDFTQHIALTQNVITYMRTKHFVSKKFGKIFSDWLSFN 81


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,769,139
Number of Sequences: 237096
Number of extensions: 1821148
Number of successful extensions: 2118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2118
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)