Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N24
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 362 FIYWIYYLFILLNNKIMTIFH 424
           FI W+ Y+   LN  I TIF+
Sbjct: 365 FITWLGYVNSALNPLIYTIFN 385


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 362 FIYWIYYLFILLNNKIMTIFH 424
           FI W+ Y+   LN  I TIF+
Sbjct: 365 FITWLGYVNSALNPLIYTIFN 385


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 362 FIYWIYYLFILLNNKIMTIFH 424
           FI W+ Y+   LN  I TIF+
Sbjct: 365 FITWLGYVNSALNPLIYTIFN 385


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 32  ILC*LFLISFWHIHLFSK 85
           IL  LF+I +W I LF K
Sbjct: 372 ILFMLFIILYWPILLFKK 389


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 484 TLIQHI*PFK*NI*QLVQPILHCILVVKYLI 576
           TL+  + PF   +  LV   +H + +V YL+
Sbjct: 556 TLVSFLQPFSNTLWILVMVSVHVVALVLYLL 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,394
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)