Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N24
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27260.1 68415.m03276 expressed protein                             29   3.6  
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    28   4.7  
At3g45040.1 68416.m04852 phosphatidate cytidylyltransferase fami...    27   8.2  

>At2g27260.1 68415.m03276 expressed protein
          Length = 243

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +2

Query: 365 IYWIYYLFILLNNKIMTIFHSIVNPQTLLLHVNHASLKIEH*FNISDH 508
           ++ ++  F+LL   I+ IF  IV PQ  L  VN  SL + + FN+S++
Sbjct: 62  LFIVFTTFLLLLGLILFIFFLIVRPQ--LPDVNLNSLSVSN-FNVSNN 106


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 251 KDVQLSKSLSWLLRHGAVKEGLQIR*SN*NPIV 349
           +D +LS S   LLR  +VKE L +  S+ NP+V
Sbjct: 115 EDCELSSSGELLLRSCSVKESLDLNESSSNPLV 147


>At3g45040.1 68416.m04852 phosphatidate cytidylyltransferase family
           protein weak similarity to SP|P20048 Dolichol kinase (EC
           2.7.1.108) {Saccharomyces cerevisiae}; contains Pfam
           profile: PF01148 phosphatidate cytidylyltransferase
          Length = 569

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 182 FWNLITACSISLSCL*VLIYRCKKDVQLSKSLSWLLR 292
           +W    +C   L  L V++ + +KD  LS S  WL R
Sbjct: 111 YWAASASCCAILIYLSVIMSQVRKDESLSSSSIWLTR 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,347
Number of Sequences: 28952
Number of extensions: 261813
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)