Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N23
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    28   1.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.5  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 515 PHHVQGPRPTRRGRAAHQPS-STPSSWR 595
           PHH   P P  R +  HQ S S P S R
Sbjct: 74  PHHASNPHPNSRQKHQHQTSKSVPRSQR 101


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 353 NPVLSHG-GLLLDRYGEPPRLREAILRC 433
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 239 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 132
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 49  ILNFLRIISRLLRQCV*RLDLYN 117
           +LN+L I +++LR C   +D+YN
Sbjct: 468 LLNYLYIRAQILRDCDIIIDIYN 490


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +1

Query: 376 LTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSR--TGPPANTS 549
           ++S S+  + P + S  S L    +S++PS  +T S   S  AP  TSS   +     +S
Sbjct: 159 ISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSS 218

Query: 550 WESGASALEHALKLESDVTNSIREVIKTCESS 645
             S +S+    L   S  T+SI     +  S+
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 344
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,736
Number of Sequences: 5004
Number of extensions: 42615
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)