Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N23
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 2e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 53 2e-07
04_04_0701 + 27373057-27374013 30 1.4
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 29 3.2
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.2
11_01_0752 - 6327269-6327764,6328571-6328839 29 4.3
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 4.3
08_02_0286 - 15326876-15328135 28 7.5
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 28 7.5
01_02_0035 - 10429549-10429654,10430507-10430799 28 7.5
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.9
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +3
Query: 306 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 485
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 486 RG---KLTGSVTDLITYRAP 536
RG +L VT L + P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = +3
Query: 339 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 509
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 510 TDLITYRAP--GQHVVGE 557
T L + P G + GE
Sbjct: 194 TPLTEFDHPEKGDALYGE 211
>04_04_0701 + 27373057-27374013
Length = 318
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +1
Query: 373 GLTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRTGPPANTSW 552
G+ +++++ AP S SS L ++ +R ++ TT S G S + PTS P++ SW
Sbjct: 235 GVANKAVKTEAPTSAYSSSSL---SSMSRDTTATTSSAGTSTGSSEPTSFPVVTPSSWSW 291
Query: 553 E 555
+
Sbjct: 292 D 292
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 405 PGFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPGQHV 548
P F+KL + + + EH ++ LL R K S+ D +++ A G+ +
Sbjct: 343 PTFSKLVYMISICQVEHCGEIAYILLSRSKYVFSIFDAVSWMAAGRGI 390
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 366 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 482
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 455 RDQAH*LPAHEGQADRLRNRPHHVQGPRPTRRGRA 559
R A LP+ G +R R RP + P RRGRA
Sbjct: 133 RGAARLLPSTRGDRERCRVRPRRPRLPGARRRGRA 167
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 287 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 138
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>08_02_0286 - 15326876-15328135
Length = 419
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 435 ATEEREHATKLIDYLLM--RGKLTGSVTDLITYRAPGQHVVG 554
+++ RE L+D+ L+ RG +TG D +Y G HV G
Sbjct: 76 SSDHREQVRVLVDFTLVYRRGGMTGGGEDDGSYTRCGYHVFG 117
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +1
Query: 439 LKNASTRPSSLTTCS*GAS*QAP*PTSSRTGPPAN---TSWESGASALEHA-LKLESDVT 606
L + P + S A+ AP P + + PPA T+ E+ SA+ A +KLE D T
Sbjct: 366 LSSPPAAPPKMAAASPPAAAPAPAPEMAPSSPPAEPPETATEAAGSAVRPASIKLEKDDT 425
Query: 607 NSIREVIKTCESSFN 651
SS N
Sbjct: 426 TGTSPADTAKSSSSN 440
>01_02_0035 - 10429549-10429654,10430507-10430799
Length = 132
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 486 RGKLTGSVTDLITYRAPGQHVVGERRISPRARPQAGE*RHQQHPGG 623
RGK L +++ G G RR AR Q G HQQHP G
Sbjct: 3 RGKKRSVFAFLFGFKSNGDGD-GGRRDEAAAREQQGYYGHQQHPWG 47
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 350 VNPVLSHGGLLLDRYGEPPRLREA 421
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,776
Number of Sequences: 37544
Number of extensions: 342433
Number of successful extensions: 988
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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